Gene detail

Detail information of Am01G027060.1 Annotation

Gene ID	Annotation
Am01G027060.1	RNA-dependent RNA polymerase 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G027060.1	mRNA	Chr01	169744715	169755929	-

Sequences

CDS:

>Am01G027060.1
ATGGGAGTTCCTTCATCGGAAACACCCACCCTTCGAATCTTCAACATACCTCAATCTTCAACGGCCGAAGATCTCTTAAACTTTCTACAATCAACTGTGGGTCCCTCTTCCGTCTTCGCTCTCGAAATCTTCAGCGATCACACTAACTGGAAATCCCGTGGTTCAGGTCGCGTTCAGTTCGAAACTTTCGATGCTAAATCACGCGCCCTTTCTCTCTCCCTTTCTAATCAACTTCTTTTCAACTCTCATTTCCTTCGCCTCTCTGAATCCTTCGAAGATATCGTTTATAGGCCTCCATTATCCCGTAACCGCCTCGATAATGGTGTACTTCATGCTGGTTTCACTGTTGCCCCTGACCGCATGGCTGTTCTTGAATCGTGGGAAGGTGTTCGAGGTTGGGTTATGTTTGAACGGAACAAGCTTGATTTCTGGGTTAGTTATGGTGATCTATGTTTTAGACTTGAGATTCCATTTGAAAATATTTTGGAAGCTGATGGTTATTGCTCTGAAGATTCTAAACCCAATGCCCTTCTCTTAAAGTTGAAATATGGGCCAAAGATCTATCAGAAAAAAGCGGGGCCAGATGTAACGACAAAGTTTAAGGCTGATAGGTTCCGGTTTTGTAAGGATGATTTTGAGTTTCTATGGGTGAGGACTACGGATTTTTCACCTTTGAAGTCAATTGGGCACTCTACGTCATTTTGTTGGGAATTTGAGGATGAATCACTTGCTTCGGAAGTTTTTCGAAGTTTCCCACTCTATAGAGAAAATTTGAAAGATTTGATTCTGGAAGATGGGAAAGAATTCATTTCTCCAACAGAAACGGTTCCGCTTGTGAAGTGTTGTTTGGATTCCAAGTTACCTTATGAGACTCTTTTCCAATTGAATTCCCTTGTCCATACTCAGAAAATTAGTTTTGCTTCGGTGGATGATGAGTTGATTGAGTTGTTTGAAAGCTTAGATGAAGAAACTAAGGCCGTGATTTTTCAAAAGTTGCACAAAATGGTTTCCACTTGTTATGAGCCTCTCAAATTTGTGAAGACTCAGTTACATGTGCTGAGTAGAAAGAGAAGGCGGCTTCTCTCATCATCACAGAAAAGGTTGGCGGATAATAACATAATGAGTTGTCATAGAGCCTTGATTACCCCGTCAAAGATTTATTGCCTTGGTCCTGAGCTTGAAACCTCAAATCATGTGGTAAAACATTTTGCAGCGTATGCTTCGGACTTCATGAGGATTACTTTTGTTGAAGAGGATTGGACCAAGCTTCCAGCTAATGCAATATCGACTAGTTTGCAAAAGGGGATCTTTGCAAAGCCTTTTAAGACTGAAATATATAAGCGGATATTGACTATTCTCCGAGATGGGATTGTTATTGGATTGAAAAGATTTGAGTTTCTAGCCTTCTCTGCTAGTCAACTGCGGTCAAATTCTGTTTGGTTATTTGCTTCGAATGATAAAATTAATGCAGCTGATATCAGAGAATGGATGGGATGCTTCAATGATATCCGCAGCGTTTCTAAATGTGCAGCAAGAATGGGTCAGTTGTTCAGTTCTTCCATGCAAACTTTTGAAGTGGCCCCTCAAGATGTGGAGATAATTCCAGATATTGAAATCGCCTCTGATGGGGATGGTGTAAACTATTGTTTCTCAGATGGTATTGGAAAAATTTCCCAACCATTTGCAAGGCAACTTGCTGAAAAGCTAAAATTGGATCTGAGTCGGATTCCATCAGCATTTCAAATTCGGTATGGTGGATATAAAGGTGTCATTGCTGTTGATCGCCAATCTTTTAGGAAATTATCATTACGTGACAGTATGCTTAAGTTTGAATCCCAAAACAGGATGCTTTGTGTCACTAAATGGAGTGAATCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGCTGTCCACCTTAGGAGTAAAGGATGAGGCGTTTTTGGCATTACAAGAAGAACAGTTACATTTGCTAGGAAAGATGTTGACTGATAGGGAGGCAGCGTTGGATGTTTTGGAAAATTTAAGTGGAGCTGATTCAAAAAGCATTCTAGTGAAGATGTTGCATGGATTTTATGAGCCAAACAGTGAGCCTTACCTAATGATGATGCTCAAGGCTCATTATGCATACCAATTATCTGATTTGAAAAGTAGATGCCGAATATTTGTCCCCAAGGGTCAAATCTTGATAGGTTGCTTGGATGAAACAGGTATTTTGAATTATGGCGAAGTATTTGTCCGCGTAACTGTGACAAAAGCTAGGGAAAAAATTGCAGATGAAAACTTAAGAGAAGTGAATGACGATGATGGCACGCGAATAATAGTAGGGAAAGTGGTAGTCACAAAAAATCCCTGTCTTCACCCTGGAGACATCAGAGTCCTTGATGCTGTCTACAATGAAGAATTAGAGGCAAAGGGCATGGCGGATTGCCTTGTATTTCCACAAAAGGGACCTAGGCCTCATCCAAATGAATGCTCTGGGGGTGATCTTGATGGGGATTTATTCTTCATAAGCTGGGACAAAGATCTAATCCCTAGTCAAATCGATAATCCAATGGACTACACAGGAAGAAGACCACGTATAATGGATCACAAGGTGACACTAGAGGAAATCCAACACTTTTTTGTTGATTACATGATCAATGATACTTTGGGTGCTATCTCCACGGCACATTTGGTTCACGCTGACCGCGAACCAGATAAGGCCAGGAGTAGGAAATGTCTGGAGTTAGCAGAGCTTCATTCCATGGCTGTTGACTTTGCAAAGACCGGAGCTCCTGCTGAAATGCCTAGAGCTTTGAAACCAAGAGAGTTTCCAGATTTCATGGAGAGATTTGAGAAGCCTATGTATATATCCAAAGGGGTACTAGGAAACCTTTATCGTGCCATAGTTGAGTCACAATCACAACTAAGGTCTAACACTGTGTTGTCAGAGAAGGTTGTTGAAGTAGCATATGATCATCAACTTGAATTTAATGGTTTTGAGGTGTTCCTGGAGACTGCATTAAGTCACAAAGAAATGTATGCACAGAAGATGAGCACCTTAATGATCTTCTATGGTGCAGAGACTGAGGTTGAATTGCTAACTGGTAACTTGCAAAATCGTGCTTCGTATTTGCAGCGTGATAACAGGAGATATGGAGATATGAAGGATAGGATTCTGATCTCAGTAAAGGATCTTCAGCGTGAAGCTAAAGAGTGGTTTGAAACTGATTGTCAACCACATGAATATCAAGCAATCGCATCTGCATGGTATCATGTGACTTATCACCCTAAATATTACCAAGAAAGCACCACTTTTCTAAGCTTTCCATGGATAGTTGGTGACATTTTATTGCATATCAAGTCTGCAAACAGTAAACTCCAAGGGGTTGGCCTAGTGGAGCATGATAAGATTTGTATTCAGGAAGTTTCAGATTCAAATCTCCACTAA

Protein:

>Am01G027060.1
MGVPSSETPTLRIFNIPQSSTAEDLLNFLQSTVGPSSVFALEIFSDHTNWKSRGSGRVQFETFDAKSRALSLSLSNQLLFNSHFLRLSESFEDIVYRPPLSRNRLDNGVLHAGFTVAPDRMAVLESWEGVRGWVMFERNKLDFWVSYGDLCFRLEIPFENILEADGYCSEDSKPNALLLKLKYGPKIYQKKAGPDVTTKFKADRFRFCKDDFEFLWVRTTDFSPLKSIGHSTSFCWEFEDESLASEVFRSFPLYRENLKDLILEDGKEFISPTETVPLVKCCLDSKLPYETLFQLNSLVHTQKISFASVDDELIELFESLDEETKAVIFQKLHKMVSTCYEPLKFVKTQLHVLSRKRRRLLSSSQKRLADNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEEDWTKLPANAISTSLQKGIFAKPFKTEIYKRILTILRDGIVIGLKRFEFLAFSASQLRSNSVWLFASNDKINAADIREWMGCFNDIRSVSKCAARMGQLFSSSMQTFEVAPQDVEIIPDIEIASDGDGVNYCFSDGIGKISQPFARQLAEKLKLDLSRIPSAFQIRYGGYKGVIAVDRQSFRKLSLRDSMLKFESQNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEAFLALQEEQLHLLGKMLTDREAALDVLENLSGADSKSILVKMLHGFYEPNSEPYLMMMLKAHYAYQLSDLKSRCRIFVPKGQILIGCLDETGILNYGEVFVRVTVTKAREKIADENLREVNDDDGTRIIVGKVVVTKNPCLHPGDIRVLDAVYNEELEAKGMADCLVFPQKGPRPHPNECSGGDLDGDLFFISWDKDLIPSQIDNPMDYTGRRPRIMDHKVTLEEIQHFFVDYMINDTLGAISTAHLVHADREPDKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFEKPMYISKGVLGNLYRAIVESQSQLRSNTVLSEKVVEVAYDHQLEFNGFEVFLETALSHKEMYAQKMSTLMIFYGAETEVELLTGNLQNRASYLQRDNRRYGDMKDRILISVKDLQREAKEWFETDCQPHEYQAIASAWYHVTYHPKYYQESTTFLSFPWIVGDILLHIKSANSKLQGVGLVEHDKICIQEVSDSNLH*

Promoter(3k):

>AM01G027060.1
CTCTAATGGAAGAAATTCTAAGGCGAACAGAAAACCCGAAAGGAGGCAGGGCAACACCTGAGAGTCCCCACACAACCTCCACCCACCACCTCCTGAACTCACACTCCAAACCACAACAGCCTGCATCACCTCGCTATCCTCACATTAAGCACATCACAAAGCATCGAGGTTAGAGGTGGAGGCCCGGAGACGATTGGGAGGGGGCAAAGAAGCAGAAGGCAAAGGGGGAGGAGCCCGGCGATCTACAAACTGCAATCTGGCGTCCGACAAGGTACAAACTATTATTGTCCAAAGTATATAAAGTATGATATTAAGTAGTGTGTTTCGGTGTACTTTAGAGTCCACAAAAAATTCAATTGTTCTAATACGCGTAGTTCATTCTTCAATAGTCAGTTTGATGAAAAGAAAAAATAACTTTGTCACTAAATACATAAAGCGCGAGGCTAAGTAATGTCTTTTATGGTACATTTTCTATTTATTAATGAAAACGTAAATAATTGTCATAATTGTTTTCGCTCATCTCTAACAGTATTTTGTATTTTATATTTTGTATAGCTTAAAAATATTTGTTATAATTAACTATGGATATTAGATAGTATTTTAGTTTATCAATTTAATTTACAAATTTGTTATAATTAACTCTGTATATTAAATAGTTTAATTTGGGATTATTTCTATATTGGTGGACTAACCTAATTTGTAAATCAAGAGGTAAAATTTATCTAATAACTGTCATAATTTTTTCCATCCATCTCTAATCGATCTTTTTGTATTTTTTATTTAGGTTTAATTAGTATACACATGCTTTGTAAAACTTACAACATGCTTTCAACATGTTAAACTACTAGTTGTTTTCTTATTTTGCTGTATTTCTACTATATATAAGTGTAGTGTGATTTCGTTTTTGCTCCTGCATGCACAACTATTCTGCCAAAGCTGTCTTAATAGTTTATTTTCGCCTTCAGCTAGAGAAGATGCAGAAGTCATGTTAATAGTGCTGGAATTTAATGCAAATTCCTAGGGAATAAATATAACAGCTATTTATCCATTATAAAGCTGTTATAAGGTAGTTACAAAAATCTGTTTACAGTTAACAGTTTGTTAACTAGTTTGTTATTTCAACAAACTAGGTTTGTAACTAACACAAACCCATCTAACAGCTATTATCCAGAGAAAGCTGTATAAATAAACTGTACATATTGTAATCACATACACTTTTTACATATCATTGAAAAGAAATAAAAGAGTTTTACATTTTTCCTTTACATTCAGTCTTTTCTTCTTCCTGTGTGCTATTTTTCTTCTGTGTATGCATGTAAATCTCTGCAAGTCTGCATCTTCTATGTGCTGTAACTCTTCAAAGTGTGAAGACCTCGCAGCAAGAAAAGAGAAGGAGGTTAGGGATCTATTTCTGAGATTGAAATAGAAGGCAAGAAGAAAAATAAGAGAGGGTGAATAATTACCTTTCTGTGGACTTGTGTGAAGGCTCAAAATAGAGGTTTTGGTGAGTAATTGTTCACCAAAAACGTTCAACAGGCACATACAATCAGATACAAAACAAGGTAAGTTAGGATTTATATTTTAAGAAAGAAATCAGAGTCAAAATCACACAGTGGTTGTGATTTTACCTTGATTGAGTTCTGTAAACTCTCAGTTGAGTCATCGCTACCTGCAAAGCAACAAATCCTGAGTTAGGGTTTTGATCTAAGCACAAACAGTAAAGGAAGTCAAAGAAAAAGATGATCTAGGGAGATTATACCTGTTCGTAGCTGCAACCGTGTTCTGTTTTGAAAGGATTCAAGCAGTCTTGCCTAGTGAACATACGAACACTGTGTTCGTAAGGTAAATCGTCAAGGTTACGAACAAACAACAGAAAAACCAAATGGGTTTTGCAAGAACAACATCCACGATCATCATTCATGCGTGATTGAAGGATTTGAAGCTTTAATCACAGAGTTTCTCTGGTGAAATCAGAAACCCTAGCACAAGGGTGTGAGAGAGACGAAGGTTGGAGAAGAAGAGAAGAAACGGCGTGAAGAAAGAGAAACAGTGAACAGTTAGGGTTTTTTTGGTTTTATTAAAAGAACCGGGTCATACCCGTACCCGTGTGCAGATCCGCGTGTTGCAACAGTGCAATATCCACTGGGTTCCGCATAATCCGTTTTGGTCACCAAGTGGGCTGGCTCTTGTTTTTTGTCACCGTGGGCTGGATCAGTGGGCTGGGCAAATTGCTATTTGCACCCCTGCTGTTTCATTTTGGAAACCTGCAAGAAAAATCATTAAATGGTTAACAAATTCAATAAATAGATGATTTTGGAAAGACATAGGAATGTTCATATGTTCATTGCTCCTTCAAAGTCGCGTTGTTGATTGAAATGTGTTACTGCGGGGATGACTTCCTCTTTTGGATTTAGTACTTTAGTTGTGTGTTATCTTTAGTAATATTGACTTGAACACTTTCATGTTTATGTTTTAAATCGCATTTGATTTCGTTGTGTTTTGATTATTATATGTCTTAGTAGATTTTACTTCTTAATATCTTATATCTTTTAACTTACCCCGTGCTATAGCGCTAAAACTAGTAAATATAAAAGTACGGCGTACTTCCCGTGTAAAGTTAGAGAACTCATAACCAACGTGGTTGGCTCAGTTGGTCTTGTCCGCTGAGTCCTGTTGGGGGTTGGCAGGGTTTGCTCCCCTGTTCGATTCCCAGTCAGAGCAGATTACGTTGGCCAGGGTTGGAGATTTCAACTCGGTGCAGATTAGTCTTTCGTTGTCAGCGTTGGGACACTGCATGGTCTGGGGCGATACCTCCGTCGGTGCCCGCCACTCACAAAAAAAAAAAGTTAGAGAACTCATGAGCTCAGCTCACTGCCTGGAAAAAAGAAAAAAGAAAGGAAAAAACAGAGCGAGTCACACACACACTGACTGAGTCATAATAGTCGTTACCCAAAAAATACACTGACTGACTCACAGTCAGAGTGACCCTAGAAAGCAAGC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF05183.15	RdRP	381	964	8.00E-181

Gene family

Gene family	Subfamily
Epigenetic Regulators	RDR2

Gene Ontology

GO term	Description	Category
GO:0005730	nucleolus	Cellular Component
GO:0006396	RNA processing	Biological Process
GO:0050832	defense response to fungus	Biological Process
GO:0061157	mRNA destabilization	Biological Process
GO:0016441	post-transcriptional gene silencing	Biological Process

InterPro

InterPro term	Description
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type
IPR035979	RNA-binding domain superfamily
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily

trEMBL

trEMBL term	Description
A0A1S2YRP0	_

SwissProt

SwissProt term	Description
RDR2_ARATH	RNA-dependent RNA polymerase 2

KEGG

KO	Description	Enzyme
K11699	RNA-dependent RNA polymerase	[EC: 2.7.7.48]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G11130	RNA-dependent RNA polymerase 2
Medicago sativa L.	MsG0880046350.01.T01	_
Oryza sativa L.	LOC_Os04g39160.1	RNA-dependent RNA polymerase, putative, expressed
Cucumis sativus L.	Csa005197	_
Glycyrrhiza uralensis Fisch.	Glyur000497s00020186.1	_
Codonopsis lanceolata	Cl_chr02_18900T	_
Arachis hypogaea L.	AH01G19760.1	RNA-dependent RNA polymerase 2 like

Expression pattern