Gene detail

Detail information of Am01G026200.1 Annotation

Gene ID	Annotation
Am01G026200.1	Pentatricopeptide repeat (PPR) superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G026200.1	mRNA	Chr01	166983661	166986285	+

Sequences

CDS:

>Am01G026200.1
ATGTGCACTCCACTTGAGCTTCAAACCTTCCGAAACCTTCTCAAACAATGCATAGCCCAACGAGACTTTTTAACCGGCAAATCTCTCCACGCCCTATACATCAAGTCCTTCATTCAACCCTCAACTTACCTCTCCAACCACTTCACACTCCTTTATTCCAAATGCGGCACTCTCCACAACGCTCTAACCGCCTTCCACCTCACCAACTACCCCAACGTCTTTTCCTACAACACCATCATCAATGCCTGTGCCAAACACTCTCTTCCCCACCTTGCCCGCCAACTGTTCGATCAAATTCCCCAACCAGACATTGTTTCTTATAACACCCTCATCGCAGCCCATGCTCGCCGTGGCGAGTGTGGGCCAGTCTTGAGGGTATTGAAGGAAGCTAGAGAGGCTGGATTGGACATCGACGGGTTCACTTTGTCTGGCGTGATCACTGCCTGCACTGAGGACATTGTCCTCGTTAGGCAACTCCATTGCTTTTCATTGTTGCGTGGGTATGATTGTTACGCGTCAGTGTGCAATGCGGTTCTTGCTTGCTACGGAAGGCAGGGACACTTGCGCGAGGCATGGCGAGTTTTCCGTGAGATGGGGGAGAGCGGTAGAGATAATGTTTCGTGGAACGCGATGATTGTGGCTTGTGGACAGCACCGAGAGGGATCAGAGGCACTAAGGTTGTTTCGACAGATGGAGAGAATAGGATTGGAGGTTGACATGTTCACCATGGCTAGTGTGTTGACTGCATTCACTTGCCTCAAGGATTTGGTTGGGGGAATGCAGTTTCATGGGAAAATGATCAAGAGTGGATTCCATAGGAACTCCCATGTTGGGAGTGGGTTGATTGATTTGTACTCCAAGTGTGCTCTTCATGGCATGTTTGAATGTATGAAGGTGTTTGAGGAAATCCCCGTACCAGATTTGGTTCTTTGGAACACCATGATTTCCGGATTTTCCCAACACGAGGACTTGTCGGAGGATGCGCTTCATTGTTTTCGGGAGATGCAGCATGTTGGTTTTTGTCCAGATGATTGTAGTTTTGTGTGTGTGATTAGTGCATGCTCTAATCTGTCATCCCCCTCCGCGGGAAAGCAGGTTCATGCATTGACAATCAAATCTGACATCCCTTCTAACCGTGTTTCAGTGAACAACGCTCTTGTTGCAATGTACTCCAAATGTGGGAACCTTCATGATGCAAGAAGGATGTTTGATACGATGCAAGAATATAACACAGTATCACTGAATTCAATGATTGCAGGCTATGCACAACATGGTGTTGAGGTTGAATCGCTCCATCTCTTTGAACAGATGCTGCAAGAGGAAATTGTGCCTAACAATGTAACCTTCATATCCGTTCTTTCTGCATGTGCACACACTGGGAAAGTTGAGGAGGGTCAGAAATACTTTAGTATGATGAAAGAAAAGTTTGGGATTGAACCAGAAGCAGAACATTATTCATGCATGATAGATCTTTTGGGTCGGGCAGGGAAACTCGAGGAAGCTGAGAGGATTATTGAGACAATGCCATTTGATCCTGGTTCTTTCGAATGGGCTGCTTTGCTTGGTGCGTGTAGGAAACATGGAAATGTGGAGCTAGCAGTGAAAGCAGCCAATAAGTTTCTCCAGCTGGAACCTTATAATGCAGCTCCATATGTAATGCTTTCGAATGTGTATGCAAGTGCTGGGAAATGGGAAGATGCTGCAATAGTTAAAAGGTTGATGCGGGAAAGAGGGGTGAAGAAGAAACCGGGTTGTAGTTGGATTGAGATAGGTAAGAAGGTGCATGTCTTTGTGTCTGAAGACACTTCACATCCAATGATAAAGGACATTTATGAGTACATGGAGGAGTTGTTAAGGAAATTGAAAGAAGCAGGGTATGTACCAGATGTAAGATGGGCATTGGTGAAAGATGAAGAAGAGGTTGGAGCAGAAGAGAAAGAAAGAAGGTTATGGTATCACAGTGAGAAGCTGGCAATTGCATTTGGTTTGATCTCCACTGAAGAAGGGGTGCCAATACTTGTTGTGAAGAACCTGAGAATTTGTGGTGATTGCCATAATGCTATCAAACTTATTTCAGCCATTTCTGGTAGGGAAATCACTGTTAGAGATACCCACAGGTTTCATTGCTTCAAGGAAGGGCAGTGTTCATGCAAGGATTATTGGTGA

Protein:

Promoter(3k):

>AM01G026200.1
GAGTGGATTCAAAAGATGGTTAGTTAGGGAAATGGTAAATGCATGAGGATATGTATTACGAAAACTAAAAAGTATGTAACGAACCTGCTGAAGAAGTCAATGATTTCCGGTAACTGTTGGTTACAAATGACTTTAGTGGCGTAAAAAGTGTTGGCTAACGTCAAAGGATAAATGCCTACATTATTTCATTCATAAATAAACAGAAATACAAAAGGTTGTAGGTCCCTATTCTTAAATTAAAAGAGTCTAAATTGTGTCATACCTTTGGGATCATTGATTCTCATATTTGTCACAATAAAGACGAATGGTTTAGATTGATCGCGTTGACTGTAAGCATTCTGAAATTGATTTGCATAATCATCCCATAGAGTGCAATGCAGTGTATGCCCTCTGTGATGATAGTAGTTAGCATAAATATTAGATAAAATTATTTTTTTATAAAGAATCCAGAAAGGAGACAACACCCGAGATCTGCCAATGTGAAGAAAGCCTTTTTTTGTGACTCGGTTGGAGTGAACAGCAACTGAGATACAGCCCCAATGAAATCTAATAAATTGGATTAAAATCAACAACAGACTTAAATGGTACAAAACAAACTAAATAACATATGTCAAGTTAGTATTTATAAATGTAATAACTAAGAACTTAGAACTAACCATATAGTGATAGAGTGTCATAATGTTTAGTCAGGATGTGTTCAAAGTCTTTGAAGAGATAGTTTGCATGCAAAATCTGCGGGAGAGGCATCTCTTGCATCGTGGTGGCCGGTATGAAAACCATTTTGTAGGGGTGTGTGTTTTTTTTGTTTTGAAAGTCATTTTTCATGTACTTTGAATGTCTGAAAACGACATGTCATATCTTCGGTTAACCTACCTCTCCAGTGCAACATCTCATTTTTAGGGACAACTGCATAGATCCGGTCTCCCTACAAAATCAGTGTCAATCAAACAAACACTTTAAAGGAAAAAAAAGTAACGGAGGAATATGAGATATTACCTTTGCATCCATAAAGATCATTTCATAATGATCTTGTTGTTGTTTGTTGAAAACTGTCCAAAGATCAATGATCTTGACTTCAATTTTCCATAGTTCTTTTTCAGGGTTGACAGCAATAATGTCATCCATTGGTCTTGCCATTTCAACAGGATTCCTGCAGTGATTTTTACGAATTTCAGAATTGAACACTGATATTGAAAACTGAAATAGAAACAGATACCAAATCTCAAACTGAAGACTGATATTGAAAACTGATATTGAAAACCGAAATAGAAATACTGATATAGAAACACATGCCCGGTCTAAAACTGAATACTGATTTTTACAAATTTCAGAAATGAATACAGATATTGAAAACTGAAATAGAAATACTGATATAGAAATAACACAACAGACAATGCAGAAACCACTTTCAAATGAATATACGGATATATTGGCGACAGAAATAAGAGGAAACCACAAAATATAAACAGATCGTGAAAACTAAAATAGAAACAAATTCCCAAAAAATAACTGAATACTGATTTTTACCAATTTCAGAATTGAAAACAGATATTGAAAACTGAAATAGAAATGAGAGGAAACCACAAAATGTAAGAGAATTTATAAAACAAAACTATGATAAATCGAGATGAATAACCTCTATCAAACTGAAACAGCCAGTAAGTTTTAACATAATAGAGCATTTCGTGTCATTGCACACTTCATCATCAATTACTTATTATTAAATAACATAAAAAAACCAAAAATACACGTGAACAGGAAAATAAAACCAAAATCAAAGCTTATAACCAAAAGCAGAGCTTATAACAAAAATCAGAGGCTATACCTGTTTCAAAATCAGAGCTTATCTACTCAAAATGGTGTCTTTCACAAATTTGTAACCAAATAACAGCAAAATAAAACTAAAATAAGAGGAAATCTTCCCAACAGAAATTAATAGACAGCAAAATACCAAAATAACACAAAAGTTATAAAAAATAAAAAACGAAACTCAGTTGAAGACAAACCTAGGAATCGAAATAGTTAGGGTTTTGTTGAATCTCTCATCAATGTTGTGTCCTTCACAATTTCGAAACCTAAAAAAAGCCAAAAATACAGAAGTCAGGCGAAATGTTCAGAGGAAACCACAAAAAGTATGGAAAAAAAAACGAAAATCAGTTTAAGAGGAAGCAAAATACCTATTTCGTGAAGAAGATTAGGGTATCGCAAAATATCCCTATCAGAGAAGAGTGGGAAGATGGGGTTCCATTTATGGATTTGCGTTGAAGCATTTTAGGGTTTTAAGAAGAGAAAATCAGAAACATTAGGGTTTTTAGAAGATCAGAGAAGAGTGAAATAAAAAAAGGGAAAAAATAAAAAGAAGAAGGGTGGGTTCAGAGGGGGAGAAATCAGAAAGATTAGGGTTTTAAGAAGATCAGAGTGAGGGGGAATGAACGAAATGCGAGAGTGAGGGGGAGAAGAGTGAAAGATAAAAAGGAAAAAAATAAGAAGAAGGGTCGTATCAGAGGGGGGGGGGGGGGGGGAATGAACGAAATGCGAATGTGAGAAGAAGAGAGGCTTCATGGTGGAGAATGAGGGTCACGAGAGGGAAAGAACAGGGGCGAGAGGGAGAGAACAAAGGCGAGAGGGAAAGAATAGCGAGAGGGAGAGAGCTGAAAAGCAAATGTTTTTTTTGAATTTGAGAGTGAGAGGGAGACAGAATTGAAGAAAGAGGGTGAAGGAAATTGTGAGTCAATTACGAAATTGTCCTCAAAAATTCCAGCCGTCAAGTTTCCCAAATGGGGCAAATGGTAAAATCATAGTTTACAATTTTCATGTATGAATATAGTGGAGGTTACACCAATTGTCGGCAATTTCAAAGGGTAAGGACTGCTCAAAGAGCAAAGCCAATTTCTCACTATCAACATCAAAAGGCAAGTTACCAACGAAAATCTTCAATTCTTCAGAAGGTTCCTCAAAATTCCCATCTTGACCAACAACTTCTTCTTCACCTTGAGTTTC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13041.9	PPR_2	204	250	4.60E-66
PF13041.9	PPR_2	306	355	4.60E-66
PF13041.9	PPR_2	410	457	4.60E-66
PF01535.23	PPR	206	236	4.10E-60
PF14432.9	DYW_deaminase	625	721	4.30E-37
PF20431.1	E_motif	527	589	1.90E-22
PF20430.1	Eplus_motif	594	621	5.30E-08

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH28

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	Molecular Function
GO:0009451	RNA modification	Biological Process
GO:0043231	intracellular membrane-bounded organelle	Cellular Component
GO:0003729	mRNA binding	Molecular Function
GO:0004519	endonuclease activity	Molecular Function

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR046960	Pentatricopeptide repeat-containing protein At4g14850-like, plant
IPR002885	Pentatricopeptide repeat
IPR046849	E+ motif
IPR046848	E motif
IPR032867	DYW domain

trEMBL

trEMBL term	Description
A0A1S3EGE5	_

SwissProt

SwissProt term	Description
PP274_ARATH	Pentatricopeptide repeat-containing protein At3g49710

KEGG

KO	Description	Enzyme
K23541	Ca2+/H+ antiporter, TMEM165/GDT1 family

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G49710	Pentatricopeptide repeat (PPR) superfamily protein
Medicago sativa L.	MsG0380013464.01.T01	_
Oryza sativa L.	LOC_Os02g01610.1	pentatricopeptide, putative, expressed
Cucumis sativus L.	Csa016018	_
Glycyrrhiza uralensis Fisch.	Glyur002050s00038760.1	_
Codonopsis lanceolata	Cl_chr01_17540T	_
Arachis hypogaea L.	AH01G02340.3	Pentatricopeptide repeat-containing protein At3g49710 like

Expression pattern