Gene detail

Detail information of Am01G025660.1 Annotation

Gene ID	Annotation
Am01G025660.1	Zinc finger, C3HC4 type (RING finger) family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G025660.1	mRNA	Chr01	164878041	164887595	+

Sequences

CDS:

>Am01G025660.1
ATGGCTACGACTCGTTCATCGGAGGGCGCCACCGATCCGACGCCGCTAATCGGGAATTCTTCCGATGAGTCAAACTCTGGGCGGAGATTTCTCCGTGGACCGAGTCTCCGGCAGGCGGCAAGGTTTCTAAGGCAGGCGAGTGGACGGAGGATGATGCGCGAGCCGTCGATGATGGTGAGGGAAACGGCGGCGGAGCAATTGGAAGAGAGACAGAGCGATTGGGCGTATTCGAAGCCGGTGGTGGTTCTTGACATTCTCTGGAACATCGCTTTCGTTGTTGCGGCTGTTACGGTGTTGATTTTGAGTCAGGATGAGTCTCCAAGCATGCCTCTTAGGTTGTGGATTTTAGGTTACGCTTTGCAGTGTGTCCTTCATATTTTGTGCGTTTGCTTTGAGTTTCGGAGGCGGAGTCGGAGACGGGAACAGTCGAATGGCAACGCAGTTGGGGTTGGAGGTAGTGGCAGTGGGGATTTGAGCTTCGGTTCTATGGATGGTTCTGGACAGTATTCGAATTTGGTGCAGTATGGGGATGATGGTTCTACAAGTATGGCAAAGCACTTCGAATCAGCCAACACAATGTTTTCTTTTATTTGGTGGGTCATTGGATTCTATTGGGTATCAGCTGATGGTCCAGCTTTGGTCCAAGATTCTCCTCAGCTTTACTGGTTATGTATAGTCTTCCTGGGTTTTGATGTTATCTTTGTCGTTTTCTGTATTGCGCTTGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCGTGCATCATTGCACTTCTGTATGCAGTTGCAGACCAGGAAGGTGCAACAAAAGAAGACATTGAGCAATTGCGAAAATTCAAATTCCAAGGAAAAAGTAACGAAAAACTTGCTGGCAATACACAGGGACCTGTTGGAGGAATAATGACTGAATGCCATGCTGATTGCCCAATTGAACATGTGCTACCCGATGAAGATGCGGAATGTTGCATCTGCCTTTCTGCCTATGATGATGGGGTTGAACTAAGACAACTCCCTTGCGGCCACCATTTTCACTGTGACTGCGTGGACAAATGGTTGTACATTAATGCTACTTGCCCCCTCTGCAAGTATAACATATTGAAAAGTAGCAGCCATGGTCAAGAGGAAGTATAG

Protein:

Promoter(3k):

>AM01G025660.1
TGGATGAGTCCAAGAATTGGAACTGGGATACTCGGAATGAAGAAGGCTGTGAAAGAACTATAATACTGGATTTTGATGAGATTCAGGATCCAGATGATCAGAATGAAGCTACTGAAACTGCAGAAACTGAAGCACCTATTAGAAGGTCTCAGAGGGAAAGGCAGAGATCAGTAAGGCTAGAAGGATTTGATACATTCCCAGATTCTGCTATTACAGCAGAGGGAGACCTGAATCACCTTGCACTGATGGCTGAGGCAGAACCAGTGAGTCTGGAGTAGGCACTTAATAACAAACAGTGGAAGGAAGCTATGCTGGATGAGCTAAAGTCAATAGAGAAAAATGGCACATGGAAGTTAGTCGAACTTCCAAAGCAAAAGAAAGCAATAGATGTGAAGTGGGTCTACAAGACTAAAGTCAAACCCAATGGAGAAATGGCGAAATATAAGGCTAGATTAGTAGCTAAAGGTTTCCTACAGAAGCCTGGCTTGGATTTCAATGAAGTCTTTGCCCCTGTAGCCAGAATTGAGACCATAAGACTAGTAGTGGCCTTGGCAAGTCATAGAGGCTGGCCCCTACATCAACTTGATGTAAGATCAGCCTTTCTTAATGGACCTTTGGAGGAGGAAGTCTATGTTTGCTAACCACCTGGATTTGAGTTAAAGGGACAAGAAGACAAGGTGTTCAAGCTTGAGAAGGCCCTATATGGACTTAAGCAATCCCCAAGGGCATGGAACTAAAGAATTGGTGAATTCCTCTTGGCTCAAAAATTCACTAGATGCACCAATGAACATGGTGTGTATGTTAAAAGGACTGGAACTGAAACTCAGTTGCTGCTGTGCTTATATGTAGATGATCTACTAGTGACTGGCAGCAATGAGACTGAAGTTGACTCCTTCAAGAAGGTGATGATGTCTGAATTCGAAATGAGTGATTTGGGACACCTATCATACTTCTTAGGAATGGAATTTATGAAGACAAGCAAAGGTACATTTCTGCATCAGAATAAGTATGCAGTAGACATCCTGGATAGATTCAAAATGGCTGATTGCAAACCCGTTTCGACTCCAATCGACACAAGCAACAAGCTGTCGAAGGATGGGGAAGAGAGTGAAGTAGATGCCACCCTCTACAAACAGATCGTTGGATCCCTTAGGTACCTCTACAACACACGACCTGACATTATGTTTAGTGTTGGATTGATCAGCATATTCATGGAGAAGCCAAAAACTTCTCATCTAATGGCTACAAAAAGAGTGCTTAGATACATCAAGGGAACACAAAATCATGGTATTCTGTTCCCTAGCAAGACTGAATCCTCTGCTACTGTCGAAGTGTTTGGCTACACAGATTCGGATTGGAGTGGAGATAAATGTGCAGAAAAAGCACAAGTGGCTATGTCTTTATGTATGGAACAACACCCATCTCATGGTGCTCCAAGAAGCAAAGCATAGTAGCCCTGTCCTCCTGTGAGGCAGAGTATGTGGCTGCTTCCTATGCAGCCTGCCAAGCATCATGGCTGAGCATGTTGCTCACTGAAACTGGACTACACAAGAACTCAGTAATGAAGTTGCTGATAGACAAAAAATCTGCAATAGATTTGGCAAAAAATCCTGTTGCCCATGGAAGGTCGAAACATATAGAAACTAGGTATCACTTCTTGCGTGATCAAGTCAACAAGGAGAAGCTGAACCTGCAATACTGCTGCTCCGAACCTCAAGTAGCTGATGCAATGACCAAGCCATTGCAAAAGGGAAGATTTGAAGAATTAAGGACAATGCTTGGAATGATGTCACTCAACAATGTAAATTAAGAGAGAATATTGAAATATGTTTGTAATTCAATTGTTTAGATTCGACTAGCTATATGAGCTTTCGACACATTCAGTTCGATCAGCCATATAAGCTTTCGACACCTTCGACTAGCTATATATAAGCTGTCGACCCCCTTCAATAAAATACGCTCTTCATTTTTACAGTTTTCCATTTTCTGTTATTCTCGTTTTCTCTCTTCCTCCTCTCCTATCAATAGAAATATCCCCAACATATATCACCATTTGCTCCTGTTTGTTTGTTACTGATGAGAGCTTGGAGTTTTTGGCTTTTTCATTTCATAATTTTAAAGCAATTCCCCTACTCAGTTGTGATGAATTTAGAACTAACGGCCTGCATTTGCAAGAGTTTAGGGTCTCCAAAGTGTCAAAGACTACATATCTAGTTAAGAAAGTACACATTAAAATAAGATAACCCAGTATTGTCAATCACTAAAATTGATTATATGATATCGTATAAAATGCTATGAATGGTTAAGTTTGGACCGACAAGTATTAAATCTCAATCGTTGATGAATTTTTATACTACATTCTACGACTATATTTAATGGTTCACTGATGTGAGGGATTTGATTTGCCCCACCCTAAAAACATTATATTTTTTATTCTCTAAAAAAATTGGAGTGGAGGACAAAACCTACAAAATCACCGTCACCGAGTCCCACCGTGCTTAAATTGCAAGGTCACTAGTGTTTTACTTAATAAACACAAAAACAGGTTGTTATTTCCATTAACTATACCCGGCCGACATCTGTGACTCTTGAAGCTTCATGAAAATCCCACCGACCTTTGTGCAGTGAAAAAGAAAAGAAAATGTAGCCAAATGCGTATTCTTTAAGCGGGAAAAAATAAATAACCCAATTGCGCGTTCCGTGTCAAAAAAAGCCGATAAACGTCACCGTTTGGAGCCCTGGACCCCCAAAAGGGAAAGAAAACAACCATAATCATAATTTCCGTTTTCCATTTCCTTTATTAATTTTTTTGTTCGTTTTCAACACTATCCATTTCAATTTCCTTGTTCAATTCTATCTGCAAACGAACTCGGCAACAAAAATCGTTGCGATTTCTTCGAATCTCTTCTCTCTAACAGTATCAGCGACTAGATTCAGATGTCCTCAACAGACTAACTCACGCTTCGTGAACAAGAAATTACAAGAGGTGATAATTCAACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13639.9	zf-RING_2	321	363	1.00E-12
PF17123.8	zf-RING_11	321	349	6.00E-09
PF12678.10	zf-rbx1	321	363	4.50E-07
PF13923.9	zf-C3HC4_2	321	362	9.50E-07
PF00097.28	zf-C3HC4	322	362	5.00E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0061630	ubiquitin protein ligase activity	Molecular Function
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process
GO:0016567	protein ubiquitination	Biological Process
GO:0016020	membrane	Cellular Component
GO:0046872	metal ion binding	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

trEMBL

trEMBL term	Description
A0A072UPE3	_

SwissProt

SwissProt term	Description
RING4_ARATH	E3 ubiquitin-protein ligase At4g11680

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G11680	Zinc finger, C3HC4 type (RING finger) family protein
Medicago sativa L.	MsG0880046214.01.T01	_
Oryza sativa L.	LOC_Os02g45240.1	zinc finger family protein, putative, expressed
Cucumis sativus L.	Csa000306	_
Glycyrrhiza uralensis Fisch.	Glyur000175s00012082.1	_
Codonopsis lanceolata	Cl_chr07_10780T	_
Arachis hypogaea L.	AH15G04280.1	E3 ubiquitin-protein ligase At1g12760 like

Expression pattern