Gene detail

Detail information of Am01G025650.1 Annotation

Gene ID	Annotation
Am01G025650.1	replication factor C 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G025650.1	mRNA	Chr01	164858712	164862528	-

Sequences

CDS:

>Am01G025650.1
ATGGCATCGTCATCATCATCAAGTAACAACGCCAACTACGACGTACCGTGGGTAGAGAAGTACCGACCCAACAAGGTCGCCGACATCGTTGGCAACGAAGACGCCGTCTCCAGACTCCAAGTCATCGCTCGTGATGGCAACATGCCCAACATCATTTTATCCGGTCCTCCTGGAACTGGGAAAACTACTAGCATACTTGCCCTTGCGCATGAGCTTCTGGGACCCACTTACAAGGAAGCCGTTTTGGAGTTAAACGCTTCAGATGATAGAGGGATAGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAAAAGAAAGTAACGCTGACTCCGGGTAGACACAAAATTGTTATACTTGATGAAGCTGATAGCATGACATCGGGAGCACAACAAGCTTTGAGAAGGACAATGGAGATATATTCTAATTCTACTCGTTTTGCACTTGCTTGCAATACATCGTCCAAGATTATTGAGCCCATTCAGAGTAGGTGTGCCATTGTGCGGTTTTCGCGATTGTCTGATCAAGAGATACTTGGTCGCCTCATGATTGTGGTTCAGGCTGAGAAGGTTCCCTATGTTCCTGAAGGACTTGAAGCCATTATTTTCACTGCTGATGGTGATATGAGGCAGGCATTGAATAACTTGCAAGCAACTAACAGTGGGTTCCAGTTTGTTAATCAAGCAAATGTTTTTAAGGTCTGTGACCAGCCGCATCCACTGCATGTGAAGAATATGGTGCGTAATGTGATTGAAGGGAATTTTGATGAGGCTTGTTCGGGGCTCAAACAATTGTATGACTTGGGATATTCCCCCACAGATATCATCACCACACTTTTTCGTATAATAAAAAATTATGATATGGCTGAGTATTTGAAATTGGAATTCATGAAGGAAACTGGTTTTGCTCATATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAGCTGTGTGGTTTATTGGCTAAGCTTTCTCTAGTTCGTCAAGCTGCTAAAGCTGCATGA

Protein:

Promoter(3k):

>AM01G025650.1
TCAACAATATGGCATATATCTGAATGATTTTATTACTGATAATGATGATAGTGATGATCTGCAAGAGGGAGAGAATAGTGCTTTGAGCCTTGCTGTACTTGAGAATCCTGCAGATCCCACTAACTATCAAGAAGCTGTAAAACATGTTGAGTGGAGGAAAGCTATGGACAATGAGCTAGCTTCCATAGAAAAGAATGATACTTGGAAGTTGGTTGAACTTCCTCAAGGAGGGAAAAGGATAGGTGTTAAGTGGGTTTATAAGACTAAACTCAATGAACAAGGAAAAATAGAGAAACACAAAGCTAGACTTGTAGCAAAGGGCTATGCTCAACAATATGGCATAGACTATTATGAGGTCTTTGCCCCAGTTGCCAGATGGGATACAATTCGGTGTATATTGGCTATTGTAGTTAGTGAAGGGTGGACTGTGTACCAATTGGATGTCAAAAGTGCTTTCCTTCATGGAGAGCTACTTGAGACAGTTTTTGTAGATCAGCCAGAAGGGTATATGAAAAAAGGGGGAGAGAATAAAGTTTATCAGCTGAAAAAGGCTTTATATGGATTAAAGCAAGCCCCAAGGGCTTGGTACAGTAAGATTGATGCTTATTTTGAGAAGGAAGGGTTTGTGAAGTGCTCTCATGAGGCTACTCTATACACTAAGGGTGGAAACAAGCATGACATTCTCATTGTCAGCTTGTATGTTGATGATTTGCTGTTTACTAGTAACAATGGAGACTTGATAGCAAAATTTAAAGAGTCAATGAAGCTTCACTTTGACATGAGTGACTTGGGGAGAATGAAACATTTCCTTGGGGTGGAGGTCAATCAAAGCAATCAATGAATTTTCATTACACAACAGAGATACATTCTGGAAGTGTTGAACAGATTTGGAATGGAGGAGTCCAAACCAGTGAGTAATCCTGTGATAACTGACAGTAGACATGGAGTGACTTTAGATGAGCACAAGGTGAATGTGAATGGTTTTAAACAAATCATAGGTAGTTTAATGTACCTAAGTGCCACGAGACCAGACATAATGTATGCAGTGAATGTGATCAGCAGGTTTATGGATAAACCCACTGACAGTCACCTTGTTGCAGCCAAGAGGATCTTAAGATACCTAAAGGGAACTGCAGACCTTGGTATCCTGTATAAGGTGGGTGAAATGAAGGAATTGGTAGCCTATTGTGATAGTGATTATGCTGGGGATATCGAAGATAGGAAAAGTACCACTGCTTTTGTGTTTTTACTCAGTACTGGTGCTGTTTCCTGGTTCTCCAAGAAGCAGCCAATTGTGACTCTATCTACCACGGAGGCAGAATATGTAGCAGCTGCATACTGTGTTTGCCAAGGTGTATGGCTCAAGAGGATATTGAGTGAGCTTGGCTTGAAGTTAGGAGAGTGTTTGATAGTTTTCTGTGATAATAGCTCTGCTATTAAACTGTCAAAGAATCCGGTAATGCACGGTAGAAGTAAACACATTGACATCAGATATCACTTTCTAAGAAATCTGTGCAGAGGAGGAACTATTGAATTGAAGTATGTTAGCTCAGAAGATCAAGTGGCAGATCTCCTCACAAAGCCCCTGAAGAGTGAAAGCTTCCTCAAGTTAAGAAGAAGGCTTGGAATGTGCTTTCCCAAGTGAAGCCCTGCTATGCTGTTTCTGCAGAATGCTTCTGCAAATCTGTGACTGAGCAATGTTGTCCCTATTGTAACCCTGTTCTAGTTGCTGTATTTCTGCTCTTGTTAATTTTGCAGACTGCTCTGCATATCTGTGATTGTTGTAACCCTGTTAAACTGAAAGTTTAAGACTTTGCAGTTTAAGGGAGAGATTGTTAGTAGTAAATCCTAGTGGTGCATCTTGTAGTTGTTTGTAATGTGGGCCTGATTGTTGTTAGCTAAGCCCATTAGTGGCTTCAGTAATCCAATTGTATAGAACAAGCCTTCTGTATATACTTGGCAATTAATGCCATTGATCAATAACAGATTCATTTTCTTTCTGTTACATTTCCTCTTACAGTAAGTACCTATTTGTTTAAGATTTTGGAAAGTTTAGAATCAATTATGTGAGCTAAAATAAGATGCATAAAATTGAAAAGTGCAACTCATGTGTTTGAGTTATAGAATCGTGGTGGATAACGTTGATTCTGGTGGGTAGAATCGATTATGATGAAAGGCAACAATTCATAATTTTTTAGATAAATAGCACTTTTGGTAGTTTATCTTTGCTCAAGGTTTGATTTTGGTTCTTTATCTTTTTTTGGTCCGTTTTGAAGTTAACAAACGCCACGTTGGCAGTTAACTGCTGACGTAGCGTCTTAAGTGTCCAATCTGACGTGCAAATAAATGTTTTAATTAATTGACAATGAAATGATAGATAAGAAATTAAGTTTTTAATTTTTAAAAACACAAAACAGAAATTAACACAAAAACTAAACACATTAAAACTAGAATTAAAAACAAATCTGAAACATTCAAGAACACATCTGAATCTTCTTCTTCCCCATTAAACCAGCCAACCAATATTCAAACTCATCACCTCATCAATCACCATCGAACTCATCAATAGTTGCAATTTTTTGAATCTTGCTTTGGTTGAAGTGTGTTGGTTCTTCTTCCAACGGATCTTGTTAGATTTGATTTTCCCTTTCTTTTTAAGCTTTTATTTTTTATTTTAATGTGTTAATTTATTTGTTAATTTATGTTTTATGTTTTTAAAATTTAAAAAAAGATAAATGCTATTGTCAAAAAAAAAAGATAGATGCTGATATACAATTAATTTTTTAATTATTTTCAAAAACATTTTTTTTTAATATCAATTTTATGAAAACCTAGGAGCCCCCAAACAAAGTTTTCCCACCTTAGAAATTCCCTCCAATTTTGAAGCGGTGTTTGGGCATATAGGGTTTTGTGTGGGTTTTCCGCTCTCAGAGACAGCAAGCAAGAAGGGAAGGCTTTGGATTGTTGTTGGCGCACCCCCATCATCACAATCAATCAAGC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF08542.14	Rep_fac_C	237	322	2.00E-21
PF00004.32	AAA	51	169	1.50E-15
PF13177.9	DNA_pol3_delta2	91	172	2.80E-11
PF13173.9	AAA_14	50	150	1.20E-07
PF03215.18	Rad17	15	82	3.80E-06

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0003677	DNA binding	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0071897	DNA biosynthetic process	Biological Process
GO:0003887	DNA-directed DNA polymerase activity	Molecular Function

InterPro

InterPro term	Description
IPR013748	Replication factor C, C-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
IPR003959	ATPase, AAA-type, core
IPR003593	AAA+ ATPase domain

trEMBL

trEMBL term	Description
A0A1S2Z697	_

SwissProt

SwissProt term	Description
RFC4_ORYSJ	Replication factor C subunit 4

KEGG

KO	Description	Enzyme
K10755	replication factor C subunit 2/4

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G63160	replication factor C 2
Medicago sativa L.	MsG0880046213.01.T01	_
Oryza sativa L.	LOC_Os04g48060.1	RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed
Cucumis sativus L.	Csa017995	_
Glycyrrhiza uralensis Fisch.	Glyur000175s00012081.1	_
Codonopsis lanceolata	Cl_chr02_39970T	_
Arachis hypogaea L.	AH01G17780.1	Replication factor C subunit 2 like

Expression pattern