Gene detail

Detail information of Am01G025450.1 Annotation

Gene ID	Annotation
Am01G025450.1	TCP family transcription factor

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G025450.1	mRNA	Chr01	164101508	164103223	-

Sequences

CDS:

>Am01G025450.1
ATGGCGTCGTATCAAGACGACGACGGAGGAGCGACGGAACTCAGCACCAGCGACGGCGACCCATCGGAAACCATCAACATCAATGAAGTTTCCAAACAATATACGTTCGACGATAACAAAGCCTTCCAAGTGTTACCCTTGAAGGACGAACCAACCTATTCGGACCATGACTCAGACCCGAAACCTCGCCCTCCTCCTATGGAACTAGTTCCCGTCGCGATTCCCGTGCCGGCAAAACCAGCTCGACGGTCGTCCACCAAAGACCGCCATACCAAGGTGGAAGGCCGTGGCCGCAGGATTCGAATACCCGCTACCTGCGCTGCTCGGATCTTTCAGCTGACTCGTGAGTTAGGTCATAAATCCGACGGCGAAACCGTCCAATGGCTTCTAGAACATGCGGAAGACGCTATCATCGAAGCCACCGGAACTGGCACCGTTCCGGCCATCGCCGTCTCCGTGGGTGGTAGTCTTAAAATCCCAACGACATCGTCAAGCGCCAATCACAACAACACCGACGAAGCCTCCGCCGCCAACGCCAAGAAGCGGAAACTTCCCTCCAACAGCGAGTTTGTGAACGTAAGCGACGGAGGTTCGGTATCGTCAGGTCTAGCTCCGGTTCAAGCCGCAATACCGCAAGGTCTGGTGCCGGTTTGGGCCGTTGGTAACACGAATATGATGGTCCCCACAAACACCTTCTGGATGATCCCACCGGCTGCGGCGACGACTAACGTTATTGGGTCGTCGAACCAGCAACAACCTCAACTATGGGCTTTATCTCCGTCGATGACGCCCATGTTTAACATGGCGGCGAGGCCTGTTAATATTCCAGAAGTTTGGCCGGTGGCGGCGGGTTCAAGTAACACATCTAACTCAATGGGGCTCACGGTGGCAACGAAGTCCAGCATGGCACCCAGTGTTAGTTCCGGTAGCGGGAATATAAGTAATGGTAGCAGAGCTCATGTGTTGAGGGATTTTTCGTTGGAAATTCACGATAAGCAAGAGTTGCAATTCATGGGTCGTTCTGGGTCTCCGAGCCAACACACGCAAGGTTCCAATCAATAA

Protein:

Promoter(3k):

>AM01G025450.1
TAAAAGCTATCTAAGTCAAGTATTAAGCCTCTTCACAATAAATGTTCATGCTTTCTTAAAAATATTTACTTTTTACAATTTCAGGCAGGTAAGAGGGTGATACTATTCTCTTATGGAAGTGGCTTAACTTCCACTATGTTCTCTTTGCAATTAAGTGAAGGTCAACATCCATTTAGCTTGTCAAACATTGCTAAAGTGCTGGATGTTGCTGGAAAGTTGAAGTCAAGGCATGAGGTATCAATCTTAAGAGTCTTTCAGAAATGGAAGTAGTCTACTTGTGATGTCAGATTTATGATTTTAGTTTCAACCATAAAGAGAGCATAGGATTTTTGACTAAACTATATTTGCAAACTTTCCCTGTAAGCGATTGAAGTCAACCAGTCCTTCTTTTTGACTATATTGTTTTAATGTTTCAATAAGATGCTGAAAACAGAATCCACTTATTGGCTCTGCAGAGATTGTTTTAATATTCTTTTGATTAGTACAATCTTTTGTGCAGTTTCCTCCAGAGAAATTTGAGGAAATCATGAAGGTAATGGAACACAGGTATGGTGGCAAGGAATTTGTGACAAGCAAGGACACTAGCCTTTTACCCCATGGCACATTCTATCTCACTGAAGTTGACTCCAAGTATAGAAGATTCTATGAAAAGAAAACTAGTGAAAATGGTTTGACTGCCAATGGTCACTGATGTCAACATAGTTAACATGTAATGCCTCTAAGTCCGAAAGGCAACTATGATTAGCATTTAGAAGGATGTTCTTGTTTGCATTAGTTTTGTTTGGGAACAAAAATTAATTCTGTAGTAGCCAGGCCTGTCTGTTCAAATAGTTTACGATGTAATTGCTCTGAAGTCTAAATAAATTCCCATTTTTTTAGCAATTATGCTTTTGAATATGGTTGTTGTGCGGGGAAGATTGAATGTCATCATTTTGGTACCAGGCATATTTGGGTGTTTACGATTTACACTTGCTATTTTTTGGGTAGGGATTTACACTTACTTTGAAGGCGCTTATTTTAAGAAATCAAATTTATCACGAACAATTGTAATTTTATTGATAGGGATACAGTGGAGGAATTCTTTACTGAGACTTCTAGTGTTGATTCTTCACAGTGGGGGGACTAGTTGTTAATTCAAGTGTTGATCATTTTATGAGATGTGGATTGGAGATTAGCTTTCCCTCATACTTTGGTTGAGGTGCTTCCTCAACATCATTTTGACGACAACCTGCTTCTGCTGAGTTGCTTGAAAGATGGAAGTGTGAGATCTTCCTTATTCCAGTTCCAAGCTTCTTGAATATCACACCCCAGCTATGAATCTCTTGATCATGAAGACTAGGGTTCTTCTGCAAGTCTTCGATATTTGAACTCAGTAATGTGTAGGGCAGATCTATTATATTTAAAAGGAACGTATATGGTAACATTTTTAAGAATAAAAGAAGGTTGGAATACAGAATTGAAGGCATTCACCAACAGATGGATATTAGGAAGTATGTTGATTTGATATATTGAGAGGAGTTGCAAAAGGAATACAACAAAATCATTTGTTTCAAAAGTATGAGTATTGGATTTAAGCATTCACACCAAACTGTTATTAGAAGAAGGAAAAACATTATCATTGGCCTCCATGTTGATGGACTTTGGTTTATTGATGCTGGAACTTTTTTTTTTGGTAAAGCAATGTATCTCCTGCGCGCAACTGCAGAGACTAATCCCTCAAGTTACTGAGATCCATTTAAGGGGTTGACCTCTCCCACCAGGTATTTTTTCATACGCACCAGCCAGGGATCGAACCCGTGACCAAATAGTTAAGGAGCCCAAATATCTACCACATGTGCTATACCATGTCGGTGTTGATGCCACGTCTGTCTTTAAGACTTTGTTTCAGTCAAATGTCCTATGTAACCATTCTCTTTTCTTCCATGTGTATGGAAGAAGTAAATGGTTCATGGACTCCATCAAGGCTTCCGGTCTTTATGGATTTTAGCCCATCTTTAGCTGATACATTATTGTTTGATCTTAATCCTAAGGTAGATGTTCCCAATAGTTTGAAAGAATTCTGGCCAATCAGTATGTGCAATGTCTTCCTCAAACTCATTTCTCAAGTGCTAGTAAGAAGGATAAGACAACACCTACATGAGTCTATTGTTCTGTGACAAAGAAGCTTCCTCCCTAGGAGTGGTACCTCAAATAATGCCATGATTTCCAAAGAGGTGGTTCACTACATATATATATATATATATATATATATATATATATATATATATATATATATATATAAGAAGAAAGGAATGAAGCATCACCTCTTATTCAAAACTGATTTTGAAAAGGCATATCACAGAATCGACTCATTCCTTAAGTTGATCCTCATGAATTTAGCTTACTCTCTCCCATAATCAAGTTGATCCTCAATTTGATCATATGATGCTTCACCTCATTTTCCCTTGATCCTAAGAGAGGGTTACGGCACGATGATCCTATGTCACCATAATTTTTTGTGTGCATGGAGAAGCTCCAGTTTGTCACTTATGTTGTTGAGCTTGAGTTTTTCATATGATGAGGCAGTACATCATATACAATTCTATTTATTTTACATATGTATATAAATTAAATTTTATTTATATTTTATTATATTTAATTTGCAATCATTTAAATAACATTTTGTCAACGAAATTATTAATTTTGGAAAACTTTTTTGCATGTGACAAAAATATCCGTAGAATATACGATATTTTTTAAATAACTTTTAAAAAAATTGTTTATTCCAAGCGTTCTTCCCTCATCATATAATAACATTCCCTCTGTTGTACTGCATCTCCTTAATTACCCAGCACACCTAAAGAAAACTAGAACTACTGGAGGTAAACCCATTTACTGGATTTTGTTTTTAAATAAAAAATATATAAGCAGCTCCGGTTGTTTCCGTTGGGTGGACTCCTAACTCTTTTATTCTACTAGTATTATCTTCCAATTCCAATTGTCCATTTCAGTATCGGTGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03634.16	TCP	85	179	3.50E-30

Gene family

Gene family	Subfamily
Transcription Factors Family	TCP

Gene Ontology

GO term	Description	Category
GO:0001067	transcription regulatory region nucleic acid binding	Molecular Function
GO:0003690	double-stranded DNA binding	Molecular Function
GO:1900056	negative regulation of leaf senescence	Biological Process
GO:0048364	root development	Biological Process
GO:0008361	regulation of cell size	Biological Process

InterPro

InterPro term	Description
IPR005333	Transcription factor, TCP
IPR017887	Transcription factor TCP subgroup

trEMBL

trEMBL term	Description
A0AAN9L8G5	_

SwissProt

SwissProt term	Description
TCP19_ARATH	Transcription factor TCP19

KEGG

KO	Description	Enzyme
K16221	transcription factor TCP21 (protein CCA1 HIKING EXPEDITION)

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G51910	TCP family transcription factor
Medicago sativa L.	MsG0880043363.01.T01	_
Oryza sativa L.	LOC_Os08g43160.1	TCP family transcription factor, putative, expressed
Cucumis sativus L.	Csa026209	_
Glycyrrhiza uralensis Fisch.	Glyur000175s00012061.1	_
Codonopsis lanceolata	Cl_chr02_42490T	_
Arachis hypogaea L.	AH09G25400.2	Transcription factor TCP19 like

Expression pattern