| Gene ID | Annotation |
|---|---|
| Am01G023770.1 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am01G023770.1 | mRNA | Chr01 | 157025431 | 157027257 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF01535.23 | PPR | 186 | 216 | 5.90E-61 |
| PF01535.23 | PPR | 248 | 274 | 5.90E-61 |
| PF01535.23 | PPR | 383 | 410 | 5.90E-61 |
| PF13041.9 | PPR_2 | 81 | 130 | 8.00E-58 |
| PF13041.9 | PPR_2 | 184 | 216 | 8.00E-58 |
| PF13041.9 | PPR_2 | 245 | 273 | 8.00E-58 |
| PF13041.9 | PPR_2 | 278 | 328 | 8.00E-58 |
| PF13041.9 | PPR_2 | 380 | 427 | 8.00E-58 |
| PF12854.10 | PPR_1 | 183 | 211 | 5.60E-29 |
| PF12854.10 | PPR_1 | 245 | 273 | 5.60E-29 |
| PF20431.1 | E_motif | 498 | 557 | 1.60E-18 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0003723 | RNA binding | Molecular Function |
| GO:0043231 | intracellular membrane-bounded organelle | Cellular Component |
| GO:0004519 | endonuclease activity | Molecular Function |
| GO:0009451 | RNA modification | Biological Process |
| GO:0006950 | response to stress | Biological Process |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046848 | E motif |
| trEMBL term | Description |
|---|---|
| A0A2K3L764 | _ |
| SwissProt term | Description |
|---|---|
| PP261_ARATH | Pentatricopeptide repeat-containing protein At3g29230 |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G29230 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Medicago sativa L. | MsG0780041163.01.T02 | _ |
| Oryza sativa L. | LOC_Os09g24240.1 | pentatricopeptide, putative, expressed |
| Cucumis sativus L. | Csa020687 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000067s00006402.1 | _ |
| Codonopsis lanceolata | Cl_chr02_38870T | _ |
| Arachis hypogaea L. | AH01G13480.1 | Pentatricopeptide repeat-containing protein At1g08070, chloroplastic like |