Gene detail

Detail information of Am01G022160.1 Annotation

Gene ID	Annotation
Am01G022160.1	general control non-repressible 4

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G022160.1	mRNA	Chr01	148879894	148885830	+

Sequences

CDS:

>Am01G022160.1
ATGGGAAGAAAAAAGACAGAAGATGCAAAGGCAAGTAACAAAGATGCTTCTAAGAAGGAAAAAATTTCTGTCTCTGCCATGTTGGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAAGTTTCATCTTCCTCCAGTAGGCCCAAGCCAAAATTTGCTCCAAAAGCTTCTGCATACACAGATGGTATTGATCTTCCTCCCTCTGACGATGAAGACGATGAAGAGTCCAAACCCTCCAGTCAGCAGCAGAGGCCTGATGTGAAGCCACTTGAGGTGTCTATTGCAGACAGAGAGTTGAAAAAGCGTGAAAAGAAAGATTTTTTAGCAGCCCAGGCTGCAGAGCAGGCAAAGAAGGAAGCTCTTAAGGATGATCATGATGCTTTCACTGTTGTCATTGGAAGCCGCACTTCAGTGCTTGATGGAGAAGTTGATGCCGATGCTAATGTCAAAGATATAACAATAGACAATTTCTCTGTTTCTGCCCGGGGTAAAGAACTTCTGAAGAATGCATCAGTGAAGATATCTCACGGGAAGCGATATGGTTTGGTTGGGCCCAATGGGATGGGCAAGTCAACACTGTTGAAGCTTCTTGCTTGGAGGAAGATACCGGTACCTAAGAATATTGATGTCCTTTTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCGCTTGAAGCTGTTGTTTCAGCTAATAATGAACTTGTTAAAATTCGAGAAGAAGTTGCTGCTCTACAGAATGCAGCTTCTGCTGAAGAGAGTTTAGATAAAGATAACAATAATAATGAAGAAGAGGATGTAGGAGAGAAACTAGCAGAGCTTTATGAAAAATTACAGCTGATGGGGTCTGATGCTGCTGAAGCTCAGGCATCAAAAATTTTAGCTGGTCTGGGTTTTACAAAGGATATGCAAGGCCGGCCTACAAAATCCTTCAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCCACTCTATTATTGCTCGATGAACCCACCAATCATCTGGACTTGAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGTCGCTGGAAAAAAACTTTGGTGGTTGTATCACATGATAGGGACTTCCTCAATACAGTATGCACTGAGATTATTCACCTGCATGATTTGAAACTCCATTTCTATCGTGGAAATTTTGATGAATTTGAGAGTGGGTATGAACAGCGGCGTAGAGAGGTGAATAAGAAGTATGAGATTTATGACAAGCAATTGAAAGCAGCTAAAAGGAGTGGAAACCGGGCTCAGCAAGAAAAGGTGAAGGATCGAGCTAAGTTTGCAGCAGCTAAAGAAGCATCTAAAAGCAAAGGTAAGGGTAAAGGAAAGGCTGATGATGATGAGATCCCACCAGAGGTACCACACAAGTGGAGGGACTATAGCGTGGAGTTCCACTTTCCTGAACCTACTGAACTCACACCTCCACTTCTGCAGCTTATTGAAGTGAGCTTCAGCTACCCAAATCGAGAGGATTTTAGACTCTCAGATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACACTTCTAAATCTTCTAGCTGGTGATTTGGTTCCATCTGAAGGTGAAGTTCGAAGGAGTCAAAAGTTGAGGATAGGAAGGTATTCCCAACACTTTGTGGACCTACTCACAATGGATGAAGTACCTGTTCAGTACCTTCTTCGTCTCCACCCAGACCAGGAGGGACCCAGTAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAATTTGGGTTACCTAGTCATAACCATCTTACCCCTATTGTCAAACTATCAGGAGGGCAGAAAGCTCGAGTGGTCTTCACGTCGATATCCATGTCAAATCCCCATATTTTATTGTTAGATGAACCCACAAATCATCTGGATATGCAAAGTATTGATGCTTTGGCTGATGCGCTGGATGAATTCACCGGTGGAGTTGTTCTTGTCAGTCATGATTCTAGATTGATATCACGTGTCTGTGATGATGAAGAAAGGAGTCAAATATGGGTTGTCGAGGATGGTACTGTGAGAAATTTCCCTGGAACATTTGAGGATTACAAGGAGGATTTGTTGAAAGAGATTAAGGCTGAAGTTGATGATTGA

Protein:

Promoter(3k):

>AM01G022160.1
ACAATCGTTACATTCAATATAGATCTGATTGCATGTTCCTTATGCATTTAATCATCTTGTTAATTAACTGCTATTGTGATGTATGTGCTTTTCAAGATGAAGAGAGGCTATGCTATGCCATGCTACATGATGAATTTGTTCTATTTGCACGGTCAGCATACAAAAAATCAAAGTGTATTTTGAAAGTAGTTTTGGAATTGTCAGAATGTACAGATTGATCAGTTTCACTTGCAAATTGTTTATTTCATTTTAGCAACCAGAAGCAAGATAATGGGAATCGAAATAGCATACACATATTACTTCTCTAAATTAGCATGTATTCTATTCTTTATAGGTTGTCACCTCTGAGCATATCAGGTAAGTGTAAATAATTTTTTGTCCAAAAAAAAATGAATCGCCCAGCTATTGCAACCATGATGAAACTAACCATTCATGTATCATTAAGAAATCCAAGTTGAAACTAATCAAATTGAATAGCCTAAGCAATCTTGCCAATAAAGTGAAATATGACATACTTTAAATCTTCTCATTTAATTATTTTTCAATTGAGAACCGTAAACTACAAATGAATTAAATCTAGTAATCAAATAAACAAATTTGGAACTCTCGAGACAAAAAGACATACTTTCACTTTCAGATAGTAGCAATCGTATGCCTCTGAAAGTGAAAGTAAAAGTGCGTCTGTCTCGGGAGTTTTAAATTGGTTCATTTGATTACTATACTTAATTCTGTGTACTCTATTTCAATTGAAAAATAATTAAATAAGAGGATGTAAAGTATGCCGTATTTCACTTTATTGGCAAGATTGCTTAGGCTATTCAATTTGATTAGTTTCAACTTGGATTTCTTAATAATACATGAATGGTTAGTTTCATCATGGTTGCAATAGCTGGACGATTCATTTTTTTTTGGACAAAAAGTTCTTTACAGTTACGTCTGATATGCTCAGAGGTGACAACCTATAAAGAATAAAATATATGCTTAGAACTTAGAAGTAATATGTGTATGCTATATCGATTCCACAACAGTTCATAATCTTGCTTATGGTTGCTAAAATGAAATAAATAATTTGCAAGTGAAACTGATCAATCTGTACATTCTGACAATTCCAAAACTACTTTCAAAATACACTTTGGTTTTTTGTATGCTGACCGTGCAAATCCTATCTTGTTATATGATTCATTAAAAATGAGTGTAGGACTCCTTTTATATATTCCTGGTGGGGATATGGGTGTGAGTGTGAGAGGAAGTGAGAAACTATATCTATCTAAATATAGAAGACAATGGTGTTTAGTTGTTTACTAATAGAAGACTTCATTTACATTAGGTATCGAGAGACCTGTTTCTCTCCCACTTTGAATTCATTTCTAAAACCAAAAGACACCCTCTCTAACTATTTCTCCAGCTAACTCACTAACTAAGGGAGGTTAGTTTGCAAGGTGGTTTTGGAGAGGCACTGGTGGGGCGTGGATTGGTGATATTATGATTTAATCTATTTTAGTATGACCAAGGGAAAATAGAGGTCAAATCTTGAAGAAAAAATTGAATTTAAATGGTCTGTGATGTGATTACACATGATTCGTGATAGAACATTATGGTTAGTGGCGGATCTAGGACCTAGGGTAGGGGGTCAATTTTTTTAAAATCACGCATCGCTGAAAATATATTAAAAATAAAATTTTAATATATTTAATTAAGTAAATTACACAACTAATAATTATCCTCTTTGCACACGGGAGGGAGAAGAATTGATGTGAGTGATTGATTGTGTAAGTGTGGATTGTCAGGAAAATTAGGAGTTTGAGTGCAAATTATTTTTTCAGGGTGTGCAAATTTTTTTTAAAGGGAGGTAGGTCTATTTTTTTTGGGGGTGTGCGCTTGACCCCCTCGGTAGAGAGTAGGTTTGCCACTGATTATGGTATCATTTGATCTATGTAGCTGGCCCACCTAGCGTAAAAAAATTTGGTTGTTCTTTGTATGCCATGGTTATTTCATGCATAGTTGCTCTTATTTCCTCATACATAATTTTAGATTACAGACTCTACAAGTGTTTATCAGCTTGTCTATTATGTCTGATGTAGGATTTCCTAATTTGTTTTTGAAGCTTTCCTAAATGTCTTGTTAACTTCAAATCCGTAACTACTTGATCATGTCTATTCCACTGCATGCTCCATTTTCACACATCTTATTGGCTGCCCAAAAATTGCACTTGACTCTGATTTGCCCTAGTATATGATAGAATATGTTATGACTACATGATTGGTTCCTTTGATTTTCAACATCTGGTTTTGGAAAATCGATAAGATAATACTCACATCAATTAAAAATTTAAAACAATTAATACAAATATATCATGCAGTTGCACATCTTCCGTATGACAGGAGGGAGCCATGGCTCCTTAAAAAATATATTTATATATAATTGCGACCTATGCTATACAGTTTACAGTTTGGTGCAGTGGCCAATAGTTGTGTTGTAACCATTGACACACAGGTTGAATTCCTGCTGGAGCTTTTTTTTTGCATCGCTTTTGTGTTTCCTTGTGCCGAAATAAAAGAATAAGGCCTCAAAAGGCCTAACCTGTAACTTGAACCCCTTACCACCTGGTTAAAACAAGGGGACTAAACCATTGGGCTCCTTAATTCTGTTATTCATTGGGGAAATTGATAGAAAGTGAGTTGGGTCGTGTTATTCATTGGGGAAATTGATAGAAAAACTATGTAGCAAATATCTTCTAGCCTCTGTTTCGAGGAAGTGCTCATATATAATCAGTTGAAAAATTGAACTTCATGCACAATGCCTATTTTATGATCATTTGTACTTTAATGTTCACATTTGCTATTCCCTAGTTTAGATACGTGTCTGGATTGTAATTTATTTATCTATTTATGCTAAAATTGGTGCAATAATTAAGTTTTATTTAGAAAAGAACATAGAAATGATTGTGTAGGTTTAGCTGGATTACACTAATATAGTTTTTACTTATTTCAGTGTTCTACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00005.30	ABC_tran	167	339	3.30E-51
PF00005.30	ABC_tran	505	640	3.30E-51

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0034227	tRNA thio-modification	Biological Process
GO:0002098	tRNA wobble uridine modification	Biological Process
GO:0005975	carbohydrate metabolic process	Biological Process
GO:0005524	ATP binding	Molecular Function
GO:0004650	polygalacturonase activity	Molecular Function

InterPro

InterPro term	Description
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR017871	ABC transporter-like, conserved site
IPR003439	ABC transporter-like, ATP-binding domain
IPR003593	AAA+ ATPase domain

trEMBL

trEMBL term	Description
A0A1S2XNE6	_

SwissProt

SwissProt term	Description
AB4F_ARATH	ABC transporter F family member 4

KEGG

KO	Description	Enzyme
K06184	ATP-binding cassette, subfamily F, member 1
K06158	ATP-binding cassette, subfamily F, member 3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G54540	general control non-repressible 4
Medicago sativa L.	MsG0880045604.01.T01	_
Oryza sativa L.	LOC_Os03g32630.1	ABC transporter, ATP-binding protein, putative, expressed
Cucumis sativus L.	Csa001227	_
Glycyrrhiza uralensis Fisch.	Glyur000039s00004196.1	_
Codonopsis lanceolata	Cl_chr02_05430T	_
Arachis hypogaea L.	AH10G11520.1	ABC transporter F family member 4 like

Expression pattern