Detail information of Am01G019840.1 Annotation
Gene IDAnnotation
Am01G019840.1 cold shock domain protein 1
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am01G019840.1mRNAChr01129609316129611168-

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF00098.26zf-CCHC1071221.00E-33
PF00098.26zf-CCHC1681821.00E-33
PF00098.26zf-CCHC1942081.00E-33
PF00098.26zf-CCHC2462611.00E-33
PF00313.25CSD7713.10E-26
PF08206.14OB_RNB15641.90E-06
Gene family
Gene familySubfamily
Transcription Factors FamilyCSD

Gene Ontology
GO termDescriptionCategory
GO:0008270zinc ion bindingMolecular Function
GO:0003723RNA bindingMolecular Function

InterPro
InterPro termDescription
IPR036875Zinc finger, CCHC-type superfamily
IPR001878Zinc finger, CCHC-type
IPR012340Nucleic acid-binding, OB-fold
IPR002059Cold-shock protein, DNA-binding
IPR019844Cold-shock (CSD) domain
IPR011129Cold shock domain

trEMBL
trEMBL termDescription
A0A1S2YSV4 _

SwissProt
SwissProt termDescription
CSP1_ARATHCold shock protein 1

KEGG
KODescriptionEnzyme
K09250cellular nucleic acid-binding protein
K03704cold shock protein

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT4G36020 cold shock domain protein 1
Medicago sativa L.MsG0880045631.01.T01 _
Oryza sativa L.LOC_Os01g36570.1glycine-rich protein 2, putative
Cucumis sativus L.Csa015731 _
Glycyrrhiza uralensis Fisch.Glyur000073s00007762.1 _
Codonopsis lanceolataCl_chr03_51960T _
Arachis hypogaea L.AH17G30910.1Cold shock protein 1 like

Expression pattern