Gene detail

Detail information of Am01G018760.1 Annotation

Gene ID	Annotation
Am01G018760.1	structural maintenance of chromosome 3

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G018760.1	mRNA	Chr01	120077565	120091857	+

Sequences

CDS:

>Am01G018760.1
ATGGAACCACAAGCCGACTCAGCTCGTGGAACATCCACACGCCCTAGGCTCTTCATCAAGGAGATGGTGATGCGGAACTTCAAGTCTTACGCGGGCGAACAGCGCGTTGGCCCCTTCCATAAGAGTTTTTCGGCTGTGGTTGGACCTAATGGGAGTGGAAAAAGTAACGTGATTGATGCTATGCTGTTTGTGTTCGGGAAGCGAGCGAAGCAGATGCGACTGAACAAAGTTTCCGAGCTTATCCACAATTCGTCCAATCACCAGAATTTGGATAGTGCAGGGGTTTCTGTTCATTTCCAGGAGATTGTTGATTTGGATGATGGAACATATGAGGCTGTTCCAGGAAGTGATTTTGTGATTACCAGGGTGGCTTTTCGGGACAACTCCTCTAAGTATTACATTAATGACCGTTCAAGTAACTTCACTGAAGTTACCAAGAAACTGAAAGGGAAAGGTGTTGACCTTGACAATAATAGGTTTCTGATCCTTCAGGGTGAAGTTGAGCAGATTTCACTTATGAAACCAAAAGCTCAAGGTCCTCATGATGAAGGCTTTCTAGAATATTTGGAGGACATCATTGGGACCAACAAATATGTAGAAAAAATTGATGAATCATATAAACAGTTAGAATCCCTGAATGAGAGAAGAACTGGGGTGGTGCAAATGGTTAAGCTATCTGAGAAAGAAAGAGACAGCTTGGAGGACGTGAAGAATGAAGCGGAAGCATACATGCTTAAAGAGTTATCTCTGATGAAATGGCAAGAGAAAGCTACAAAGTTAGCTGTTGATGATACGGGTGGAAAAATGGATGAGGTACAAGCGAATGTTGCTAGCCTAGAAGAAAATCTCAAGGCAGAAAGGGATAAAATTCAAGAAAGTAAACAAATTCTGAAGGAGCTTGAAACAAAGCACAACAGCTATGTAAAAAGACAAGAGGAGCTAGATAATGATATGAGGAAATGTAAGGAAGAATTTAAGGAGTTTGAGAGGCAGGATGTTAAATATCGGGAAGATTTTAAGCACATGAATCAGAAGATCAAGAAGCTAGAGGATAAAGTGGAAAAGGACTCATTAAAATTTGAAGCCCTTGTAAAAGAGAGTGAAGACTCAAATGATCTGATACCGAAACTTGAGGATAATATCCCAAAATTGCATAAGTTGTTGCTTGATGAAGAGAAGGTCTTAGAAGAAATCACTGAGAGTTCCAAAGTTGAAACTGAGAAATTCCGCTCTGAGCTTGCTAAACTCCGTGTGGCGCTTGAGCCTTGGGAAAAAGATTTGATCGAACACAAGGGAAAGCTTGACGTTGCATCTAGTGAGGCTAAGCTTCTAAATGAAAAGCATGAAAGTGCTTGTGAAGCCTTTAAAGATGCCCAAAATCAAATGAAAAGTATATCAGAAACAATCAAATCAAAAACTGCTAGCATTTCTCAGATTAAGAGTGATATAGAAAAGAGCAAGTGTGAAGCATCAGAAGCTCACAGAGTGGAAGAGGAATGTATCAAAGAACAAGGTGCCCTGATTCCTCTTGAACAGGATGCTAGACAGAAGGTTGCTGAACTGAAGTCAGTTCTGGATTCAGAAAAAAGCCAGGGATCAGTTCTAAAAGCAATCATGAAAGCTAAGGAAACCAGACAAATAGAGGGAATATATGGCCGCATGGGTGACTTGGGTGCTATTGATGCAAAGTATGATGTTGCAATATCAACAGCATGTTCTGGGCTTGACTATATTGTAGTGGAAACAACAAATGCAGCACAAGCCTGTGTTGAATTGCTTCGCAGAGAGAACCTCGGTGTTGCTACTTTCATGATATTGGAGAAGCAAGTTTATCTTCTTCCAATGATGAAAAGGAATGTAAAGACTCCAGAGGATGTTCCCCGTCTTTTTGATTTAGTAAAGGTTCAAGATGAAAGGATGAAACTTGCTTTCTTTGCAGCACTTCGAAACACAGTTGTTGCTAAGGAACTTGACCAGGCAACACGCATAGCATATGGTAAAGACAATGAGTTTCGGCAAGTTGTTACTCTTGATGGTGCACTCTTTGAAAAATCTGGAACAATGAGTGGTGGGGGTAGTAAGCCTAAGGGTGGGAAGATGGGGACATCTATTCGAGCTACAAATGTGTCAGTAGAAGCAGTTGCAAGTGCTGAAAGGGAGTTGTCTGGATTGACCGATAAATTGACCGCCGTTCGCCAGCGAATGATGGATGTTGTGCGACGATATCAGGCTGCAGAAAAAACTGTTTCTGCTCTGGAAATGGAGTTAGCTAAAAGCCAGAAAGAGGTTGACAGTTTGAATTCACAACATAGTTATATTGAAAAACAACTTGGTTCCCTTGAGGCTGCATCAACGCCACACGAGGATGAGCTTGGCAGATTGAAAGAACTGACGAAGATTATTTCTGCAGAAGAAAGGGAAATTAGTAGACTCACTGATGGATCTAAAAAGCTGAAGGAAAAGGTGTCGGAGCTTCAGAGGAATATAGAGAATGCTGGAGGTGAAAAATTAAAATCTCAGAAGTCAAAGGTCCAGAAAATTCAGTCTGATATTGACAAGAACAACTCAGAGATTAACCGTCACAAGGTCCAAATAGAGACAGGGCAAAAGATGATGAAGAAGTTGACCAAGGGAATTGAGGATTCAAAAAAGGAGAAAGAGCGACTAACTGAGGAGAAGGAAAAGTTAAGAGCAAACTTCAAAGAAATTGAACAGAGTGCATTTGTTGTTCAAGAGAATTACAAGAGAACACAAGAGATGTTTGACAAACACCGCGATGTCTTAGAAGAAGCAAAAGCTGAGCATGATAAGATGAAAAAAACAGTAGATGAACTGCGTGCATCTGAGGTTGACGCTGACTTTAAATTAAAAGAATTGAAGAGAGCATACAAAGACTTGGAAACAAAGGGGAAAGGTTACAGAAAAAGACTAGATGAGTTGCAAACTGCTATTTGCAAGCATCTTGAACAAATTCAGGTAGATTTAGTGGATCATGAAAAGCTACAGGCAACATTGGCTGATGAACATCTCAATGCTGCTTGTGACCTGCAAAGGGCCTGTGAAATGGTCACCTTGCTTGAAGCACAACTGAAGGAGATGAATCCAAATCTTGATTCAATTGCAGAATATCGAAAAAAGGTATCATTGTACAATGAGCGAGTAGAAGAACTTAATGCAGTCACTCAGGAGCGAGATGATATAAAGAAGCAATATGATGAACTGAGAAAGAAGAGATTGGACGAGTTTATGGAAGGATTTAATGCTATATCATTAAAGTTAAAGGAAATGTACCAGATGATAACACTTGGAGGTGATGCAGAACTCGAGCTTGTGGATTCTTTGGATCCTTTCTCTGAAGGTGTTGTATTCAGTGTCAGACCACCAAAAAAAAGCTGGAAAAATATTGCTAATTTATCTGGTGGCGAAAAGACTCTTAGCTCATTGGCTCTTGTATTTGCTCTTCATCATTACAAGCCTACGCCGCTTTATGTAATGGATGAAATCGATGCTGCCCTGGACTTCAAGAACGTTTCTATCGTAGGGCATTACGTGAAAGACAGAACTAAGGATGCTCAATTCATAATCATTAGCCTTAGGAACAATATGTTTGAATTGGCTGATCGTCTTGTTGGTATTTATAAAACTGATAATTGCACAAAGAGCATCACTATCGATCCACGTAGTTTTGTGGTGTGCCAAAAAGCTGCATGA

Protein:

>Am01G018760.1
MEPQADSARGTSTRPRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSSNHQNLDSAGVSVHFQEIVDLDDGTYEAVPGSDFVITRVAFRDNSSKYYINDRSSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIGTNKYVEKIDESYKQLESLNERRTGVVQMVKLSEKERDSLEDVKNEAEAYMLKELSLMKWQEKATKLAVDDTGGKMDEVQANVASLEENLKAERDKIQESKQILKELETKHNSYVKRQEELDNDMRKCKEEFKEFERQDVKYREDFKHMNQKIKKLEDKVEKDSLKFEALVKESEDSNDLIPKLEDNIPKLHKLLLDEEKVLEEITESSKVETEKFRSELAKLRVALEPWEKDLIEHKGKLDVASSEAKLLNEKHESACEAFKDAQNQMKSISETIKSKTASISQIKSDIEKSKCEASEAHRVEEECIKEQGALIPLEQDARQKVAELKSVLDSEKSQGSVLKAIMKAKETRQIEGIYGRMGDLGAIDAKYDVAISTACSGLDYIVVETTNAAQACVELLRRENLGVATFMILEKQVYLLPMMKRNVKTPEDVPRLFDLVKVQDERMKLAFFAALRNTVVAKELDQATRIAYGKDNEFRQVVTLDGALFEKSGTMSGGGSKPKGGKMGTSIRATNVSVEAVASAERELSGLTDKLTAVRQRMMDVVRRYQAAEKTVSALEMELAKSQKEVDSLNSQHSYIEKQLGSLEAASTPHEDELGRLKELTKIISAEEREISRLTDGSKKLKEKVSELQRNIENAGGEKLKSQKSKVQKIQSDIDKNNSEINRHKVQIETGQKMMKKLTKGIEDSKKEKERLTEEKEKLRANFKEIEQSAFVVQENYKRTQEMFDKHRDVLEEAKAEHDKMKKTVDELRASEVDADFKLKELKRAYKDLETKGKGYRKRLDELQTAICKHLEQIQVDLVDHEKLQATLADEHLNAACDLQRACEMVTLLEAQLKEMNPNLDSIAEYRKKVSLYNERVEELNAVTQERDDIKKQYDELRKKRLDEFMEGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITIDPRSFVVCQKAA*

Promoter(3k):

>AM01G018760.1
TTCACAAATATCAATGCCAGATTTAGTTTTAAGTTTTATGGGGAAATGTTTTGTTATTGTAACAAGCTTAAAAACTTAGTAAGCTTTAGCCTGAGGGAGAGTGTTAGAATATCATATACGATTTTCCATATCAATTAGTTTTAATTAGAATCAATTAGGTTTAATTAGCCCAAAATTGAGTGGAAGGGGCCCTCAAAATTTAATCACTCCTTCCCCTTTTTGTTGGCAACCAAACGATGGAAAGAAAGACTTCACTTTTACATTCCCTCCTTAATATTTCCTTTCTTCACCATTCCCCTTAACCAAACACACTAGTGCATACTTAATAGGCTAATAGGCTTTGCCTTTACTTTATTTATTTTTGATAATAAAAGGGGCTTAAATCCCAAAGAGGAACAACACAATTAAACAGCCGTGACTAGTCTAGGAGTAAAAACTCCATTACAATCATCATGCACAAATTGCAAAATAGTCTCCGGTGTTGATCAAAATAACGCATATCTCTCTGAGGATCACAGGCCAAAGAGGCAAGCCCATCTGCCACTAAACTTGCTTCTCTATACACATGAAGAATGTTGACTCTCCAATCAAGCTCCAGCAAATTCTTGATACGGGTAACAAGTCCTCGCCCCACAATGTTCCCAACCGTAACACCTGTAAATTAAGAAACAACTGCTTGCGAATCCAATTGCAGCTCCACATTGCGACAACCTTTGCTCCTGGCTTTGCCTTTACTTTAGGTGTAAGTATAAAATTTTCAGAGATACATGTCAATGTCTCACGTTGACTAGGCACAAGAATTCCTTCTCAAGTGTATCGGAAATTGGTTGGCGTCAAGTAACATTGGATTAAATTTTATTGATCTGGGCCCTACTCTGTTTGTTCAAATTTCCTATACGACACTTGATAAAAACCACCCATTTCCTCTTGAAAGTAGCCGGGCAACGCGTCTTACGAGCGAGTTAATGTTTTTGTCCACCCCTAGCTAGAAGTAAATATCATCTCCATTTAGATACACCTAAAACACCCTAAAATCATGGTGATAGAAAAAATAAGTAGAGAGAAGTAATGGAGAGGATCTTGATGCGTTAGATGAACCTTATTGTAAATATAACTTTAAATCCAAGTAAAATTTTCTTGCCAAATAAAAGAGAGAGATAAAAAGATAGAAATTACTTCTCAAAAATATCTTGTTTGCAGAAGATGGAAAAGTTTTCTTGGATCGAAAATTATATTTATAGTAAGGCTCCATCTAACATGCACCATCTTAAATGTTGTGCATTAGTGCACAACAAATATAACCAACTTGATTTTAATAATTTTATTTTTAATGGTCAAAATGAATGGCCGGTAAAAGGGAAGAAATGTCTAGCACTTAGATGAGAGTGTCTCTTTACTTTGCACAACCTGCTACTCGCAAGAAGACTCAGCTCTGCATGGACGACACCAGTTACTATTGATGACGAATGTGTTTCTTCACTCACATGGTGGAGCAACATAGCTTTCTTCCTTTGCATAGTCCCCAATGTGCTAATTAGTTGATTAACTTGGCTAGAACCACGATTAAGTCCTCTAGTACTAAGGCGCTTCCCTCTATACCTTCTTCGCCCTTAGTTTCCCCATTGGTGACTCCAGCGATAGAGTCTCCCTTGATGTCGTCAATGACTCGGTTGCGATTGTGGCTTCACTACGTAATTTGAAACTAGGTAAGATGAAGTTGTTACCATTTTCGCCATAATTTTACAAGATATGCGCCATGGTCCAATCAAGGTTACTCAAAAATAGTAAACAACAAAGCACAAGTTGGTTCATTTCGTCCATATTTAAAACTAAAACAACTCACTTGAAAATTTAGCTTAAAGTAACAAACTTTCCCAATCCACTCATTGCGATTTAAGTAGCAAGTTGTTGCCCACTCACATAAACTGTAAGAAGAAAAAAATCAAAAACAAAAATGTAAAGTTGCAAAAACTACAGAACAATACTAACACAAGAAAAAAGGTGATCGATAAGGGGGACCGCCGAGAGAAAGGAAAGAAGAAAGATAGTATTAATGAGAACAAGTTAATGATATTCTCTCACATTACAGTGATTAGAGATAAACAACTATCATTGAACATGAATGTCATGGAATTAGAAAATGACATAAAGAGTATGGGAATTTGCCCTTTTGTTCATCCATGCACCACTAAGCAAGCAAGTGGTGGATGGTATAAGCAGTCCTTACAAGTAGAGTTGTCAATTTTAGCCCAACCCAACTGGCCGGCACAAGGCCTCGTGTTTTGGGCTTGACTGAGCTCATTAAATAGGGGCCAAGGAACAAACCAGGCCGTTTTGGCCCAGGCCAGTTGGCCCTGTCCTACTTTTTTTATATTTTTTTGAATAATTTTTATGATTTCTTTTGTTAAGTTAAAATGAGCCACAAGCCGGCTCATCGGCCCAGTGTTTTGGACTGGATTGGACTGCACAAAACACAACCTAGTCAACAATTGAGCTGGTCCAGCCTAGCCCACTTTTACGTTTTGGCCCAGTAGGCCGGGTCCGACTAGGCAACACATCTTGACAGCTCTACTTACAAGTAATATGGACGGATAAAGAATATAACACAAAAAAATTGTAAGAATAGTTTGAGAATTTCATGTTTTGGGGGTGTACCTAAAAAACGATGAGGTGTCATTAATGCTTAGCTAAGACGAATTTTGAAAACTCGCCAAAATTCATTTGCCGCCAAACAGCCAGCACCTGCCGTCAATTCGAATCGACTCAATCACTTCTCATTCCCACACAAACGACTCAAAAATTCAATTCAAGAGAGCGCTTCATGTTCATTGTCATCTACCTGTAGAATAAACCAAAAACAGAAAAAGTAAATACAAGTTACGCTTTACTTTCTCTGTGCCCTAAATTCCCAATTCGAATTGCAGCCAACGGGTTTCTGATTTTCTCCCACCGAATTTCGAAAACCTAAACGCATATTCCGAGTTAACTCGCTCCGCGTTA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02463.22	SMC_N	18	1220	1.30E-65
PF06470.16	SMC_hinge	548	664	9.90E-20
PF13175.9	AAA_15	19	490	5.60E-14
PF13555.9	AAA_29	21	78	2.90E-06

Gene family

Gene family	Subfamily
Epigenetic Regulators	CPC1

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0007076	mitotic chromosome condensation	Biological Process
GO:0005524	ATP binding	Molecular Function
GO:0032991	protein-containing complex	Cellular Component
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR024704	Structural maintenance of chromosomes protein
IPR036277	SMCs flexible hinge superfamily
IPR010935	SMCs flexible hinge
IPR003395	RecF/RecN/SMC, N-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase

trEMBL

trEMBL term	Description
A0A1S2YT40	_

SwissProt

SwissProt term	Description
SMC4_ARATH	Structural maintenance of chromosomes protein 4

KEGG

KO	Description	Enzyme
K06675	structural maintenance of chromosome 4

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G48600	structural maintenance of chromosome 3
Medicago sativa L.	MsG0880045506.01.T01	_
Oryza sativa L.	LOC_Os05g41750.1	RecF/RecN/SMC N terminal domain containing protein, expressed
Cucumis sativus L.	Csa011334	_
Glycyrrhiza uralensis Fisch.	Glyur000682s00024316.1	_
Codonopsis lanceolata	Cl_chr03_37550T	_
Arachis hypogaea L.	AH20G31750.1	Structural maintenance of chromosomes protein 4 like

Expression pattern