Gene detail

Detail information of Am01G018220.1 Annotation

Gene ID	Annotation
Am01G018220.1	mechanosensitive channel of small conductance-like 10

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G018220.1	mRNA	Chr01	117116882	117124797	-

Sequences

CDS:

>Am01G018220.1
ATGAAATTCTCAAGTCTCCTTCACTCTTCTTATCGCACTATGTTTGAAATGGAGAACCCAATGTCCGCTTCAGATCACATTGTTCTCACCTTCCTTGACCAAGACAACCCTAAACCTTCCTCTATGGAATTAACTGAAACTCACCACAACACCACAGAATTTCATGAGAAGTCTAAACAACCTTCAAGAGTCAAAACCCTTAACAGTCTCAGCTTCTCCAAACCCAAATCCCGTTTCCTAGAATTCAACCATCCACCCCACAACAAGCCAACAATAACACCCGAAGAAAGTAGTGACATTAATCACCCTTCCTACAAGATCTCTTCCCTGAAAGAAGAAGACGACGACGAGGAGGAGGACTTTGAATGGGCGGAAAAGGAGGAGGATGATGACCATGACTACGAGCATGATCCAAAGTCACACAAAAAGAAAAAGTTTAGAGTGAAGTGGAGAGTTTTGATGGAATGGATATTATTTCTAAACATATTAACATGCTTAGTATGTTCCATCACAATAAGAAACATAACAAACATGCACATACTAGGTTTAGAAATATGGAGATGGTGTTTAATGGCAATGGTAACATTCAGTGGTCGTTTATTTTCAGGTTGGTTAGTTGCTGTAACAGTTTTCATCATTGAACGAAACTTCATGTTAAGAGAAAAAGTCCTATACTTCATCTACGGGTTAAGAAAAAGCATAAGAAATTGCATATGGTTAGCCCTCGTTTTACTCTCATATTGGAGTGTAGTTTTCGATGATGTTCAAAAGAAAAACCACAAGTTCCTAAACAAAGTGTTTCACGCACTAGTGGCTGTTCTAGTAGGTGCAACAATTTGGTTAGTTAAGATTGTGTTAGTGAAAATGCTAGCTTCTTCATTTCATGTGACAACATATTTTGATAGAATGAAAGAGAGTGTTTTTCATCATTATATATTGGATACGTTGTCGGGTCCACCAATGGAAGAAGCTGAACAAATATTACAACATCAATTACATCATTTGAAAGGGTCTAAGACTTTGCCTAGGAAGTGGAAAATGAAAGATGTGAAGAGATTTGGGTCTAGGAAAATTGATATGGAGAAGCTGAAGAAGCTTAGCTTGGAGAGTACAGCTTCAGCTTGGAGTGTGAAGAGGCTTGTTTATTATGTTAGGTCTTCGGGTTTGTCTACTATTTCTAGGACTATTGATGATTTTGGTAATGCTGAATCTGAGATTAGCAGTGAATGGGAAGCTAGAAGTTGTGCTCAGAAAATATTCAACAATGTTGCCAAACCTGCTGCCAAGTATATTGAAGAAGAGGATCTGATGAAATTTTTGAAGAGGGCTGAAATCCATACAATATTCCCACTCTTTGAAGGTGCTCTTGAAACTGGGAAGATTAGCAAGTCATCATTTAGAAATTGGGTGATTCGAGCTTATTATGAACGAAAAGCTCTAGCACAATCACTGAATGATACCAAAACAGCAGTGCAACAACTTCACAAATTAGCAAGTGCTGTTGTGAGTGTGGTAATAATCATTGTGATGCTTTTGGTTATGGAAGTGGCTACCCTCAAGATCATATTCTTCTGTGTCACACAAACCGTTTTAATTGGGGTTGCCTTCCAAGGAACTTGTAAGACTGTTTTGGAATCCATCATCTTTGTCTTCGTCATGCACCCTTTTGATATTGGTGACCGTTGTGTCATCGATGGTGTTCAGATGATTGTAGAAGAGATGAACATATTGACAACTGTATTTCTTCGATATGACAATGAGAAAATATACTACCCTAATGCCGTTTTGCTCACTAAGCCAATAAGCAATTTCTATAGAAGTCCAGAGATGGGTGATGGAGTTGATTTTACCATTGATGTCAACACTCCCATTGACACTATCATTGCATTCAAGAAATCAATACAAATGTACATTGAGAGCAAGCCAAATTACTGGAATCCAAAGCACAGTGTGGTGGCGAAACAAATGGAAAATATGGACAAGTTGAAGATGGCTTTATATGTGCAACATACCATCAACCATCAAAACTATGGCGAGCGAAGCACTAGAATATCAGAGCTAATCTTAGAACTGAAAAAGATCTTTGAGATACATGGTGTCAAGTACCATCTTCTTCCTCAAGAAGTCCACCTTACCCAAATGAACATTGGAAATGGGAGAGTTATGTTTTAA

Protein:

Promoter(3k):

>AM01G018220.1
AATCCGTCGGAAATTGCGACGGATAAGAGTTCGTCGGAAAGTTTTGTAGGAAACGAAGCTTATTCTTGTAGTGTATTGGTGGTGCTGCGGAAATTAGCATAAAGGGGCACATTCATCTATTATGCTGAGTATCTGCCAATATTGCATTATTGCTACTTCGGAGATCATGTGGCTGTGCTATTTCTTTGTGTCCAAATTGTTTTTATTGAGTGCCCCATCTCTCGTTGACCTTTGCATTTTAGCAAGTATACTTTGTCTGTGGCATGGTTTACCTCTCTCCTATAATGAATCTTGACACAAATATTACTATCACTAGCACCCTCGTCTCAGGAAAGATCATTGAAGGTCCACCCAAGAGCGCTTAGATGATATGATAAAGGTCTCTTTTAGCTTAACTAATGTTATGGGTTTGAATCCAGCGTGAATGCAGCAGTGTTAAAACTCTTGATAGAGAGAGCTTTGCCGCCATTGTGGTTCTACCTGGCTCGAGAGATTAGTTTCTACAGTTGTGTGAAGAGGATACATTGTTTACACTAAAAGAAAGATCATCGAAGGTCCAAACCTGTGCATTGCTCTGCCAAGCTTTTGTGTGGAATTGCATTCTGGAGCTCCTCCACCGTGATTTGACAAGCTGTAAAACAAGTTTCTATAAGCCAATCAATTGACCCTCAACAACCTGTAGCTTCAATGGTGCCAATCTCATTGTCCCAACCAAGCTAGAGACTAGCCACTTTATCATTACCTACCAAGCAACCTTTTTTCCCTCTATTGAACCATTGGCATCAATGAATAATGACCATACACCTAAAGTCTAGAAGTAACAGAGGAGGCTCCACCGAAACACAACACCCAAGTAAATCAAATAGTAAAATTTCAGCGATATAGATATGTCGGCTCTCGAGTTCGAACTGGGTGTGACCGGTGGTAGTGTGTATGCGTTGTGTTTATTTGTCACTTCATCTAATAGACAAAAAAATCAAATAGTAAAATTAACACCTATAAAAAATAGTAAAATTTATCATACATTACACGCTAATTTCTGGCCTTTAACACGTGAAAGTAAGATCAACTCCCTTAATAAAATCGGAATATTTGGTGTAATTTTCACTATGTTACAATTACCTTATAATATCTATTGAAATGACGGCAAACTTTTCAAGTGTAACAGAAAGACAGCATAATATTTTTCTATTTTCTTTGTCCGCGTAGCCGCAACTGATTTAAATTTTGTAGAGGAACAATCAAAATGATGACCATGTGAGCAAAATCATCAGAAACGTGTTTGCAATTTGGATTTGTAGTACAATTCACCAAAGAATTTGGGCAGGTTGCGTTTACTTTCCGTATCACCGTGTTTTCAAGAAGTGCGAGGACTGAATGCGCACAAGCTACAGCGCCGGTGCTGGACCACACTGATTTCAACACTGAAATTATAGCACGTCAACAGAAAAGGACACCGTAATCAGCGTCCTTGCAAAAATAAAAATAGACTTTAATTTGAATACACAATAGGTGTAGGGGCTTTTACCACCACTACCAATCACAATTCATTGAGTGGTTGGTTACTGGTTGATAATTTGTGGTTATCAATTGACCAATTTCTCTTTAATAATGTGTCACTATGTGATTAGTAGATAGTGTACAACATACATACACCTATTGTGTATATAAATTAAATCCATAAAAATATCATATTTTGAGGAAAAAAAAAATAAATAACGTTTTCTTTGTTATTACTAAGAAATACTAAAGAGAAACTTGGGGTGAGCAAGACTCATCCCGTCTTTGTCCCATTTAACCCGCAAAGTTTCGTGTTTGTTCGGGTTTGAAGATGGGTTATACTCTAAAGAATTGGCCCGACCAAAATTTAGGGATGAGTTTGGGTTAGATATAACCTGTTCCAACCCGTCCATTACTCACTCATCACCCTAATTTTTAACTCTATTACATTGGTAATGACATTTTTATAAATAAAATATAAAATATTCAATTTAAAATCTATGTTAGTTTAAGTAAAACATTGTTGTAAAGTATTATTGTAAAAGTCATTTTTTGAGTTTGAATACACGATAAAATACTAAAAAAAAATTCAATTTATCAATTCTAACGTTTACTTATTCTTGAGTGACCACCTTATAATTTTACTTCAAATGTCCTTTGGGCCAACTCTATCTTGTCTTAAATAAACTCAGTCTTACTTTGACCCTATAAACATCGAGTTTATTCGGGTCTAATGACAAGTTAGGGTTTAAAAAACCACTATAAAATTTTATGGTCGGGTAAGAGACAAGTAAAATCCGTCCCAACCCGTCCTTTACTCACCCCTAGTTAGAACCGACATAAAAGATTAGTCTCCAACTTGATAAACCAAACTTCGAATCTCCATCTGGAAAAGTGTCTACATTTATTGTAATCGTATCTCAAACAATATTACCTTCGATTGGTAACCCAGGTCGGCGTGGCTATGGTGGTTTACTTAAGGTCCACTAGCCACACTCGGGTTTGAACCCGAAAGCCGATGTCTCCATGTCGCTGAAATTGCCAAGGCAACCAATATCGAAGGACATAAAAAAATGGAATTGTATGACATGTAAACCAAAGACATATTTTAATGTTATAAAAAAATAGTGAACCAGAGACAACAAAATAAGTTATGGCATGTGTATATTGAAAGCTATGTAAATTAGTATATATATTTTATAGAGGAATTATACCTACCTTCACATAGACCTGCTTAAATCCTACATATATATTCCCTCTCTTTTTGAAATGACGTTGACCTTGATCCCCTCTCAATTCCACACGTCTTTCCCCTAATAACGGGGGTGTGTATAATTTCCTAAATAAATAAAGTTAGTGGGTATTTGTTTAAAAAATAAAATATAGATACATGTCGACTTTAAGGTGGTGGTAATGAGTGCAATTTCTCCTTTTTATTAAGTGGCGTGAAAAGGATATAAGCCATTAAGCCTAGCTCCCATATAAATCCTACTACACCAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00924.21	MS_channel	496	701	4.70E-23

Gene family

Gene family	Subfamily
Transporter family	MscS

Gene Ontology

GO term	Description	Category
GO:0050982	detection of mechanical stimulus	Biological Process
GO:0008381	mechanosensitive monoatomic ion channel activity	Molecular Function
GO:0005886	plasma membrane	Cellular Component
GO:0006820	monoatomic anion transport	Biological Process
GO:0034220	monoatomic ion transmembrane transport	Biological Process

InterPro

InterPro term	Description
IPR016688	Mechanosensitive ion channel MscS-like, plants/fungi
IPR023408	Mechanosensitive ion channel MscS, beta-domain superfamily
IPR006685	Mechanosensitive ion channel MscS
IPR010920	LSM domain superfamily

trEMBL

trEMBL term	Description
A0AAN9MTY4	_

SwissProt

SwissProt term	Description
MSL10_ARATH	Mechanosensitive ion channel protein 10

KEGG

KO	Description	Enzyme
K22048	mechanosensitive ion channel protein 4/5/6/7/8/9/10

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G12080	mechanosensitive channel of small conductance-like 10
Medicago sativa L.	MsG0880045449.01.T01	_
Oryza sativa L.	LOC_Os06g10410.1	uncharacterized mscS family protein, putative, expressed
Cucumis sativus L.	Csa006207	_
Glycyrrhiza uralensis Fisch.	Glyur000346s00018171.1	_
Codonopsis lanceolata	Cl_chr06_14110T	_
Arachis hypogaea L.	AH20G01530.1	Mechanosensitive ion channel protein 10 like

Expression pattern