| Gene ID | Annotation |
|---|---|
| Am01G017580.1 | pentatricopeptide (PPR) domain protein 40 |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am01G017580.1 | mRNA | Chr01 | 114608823 | 114614624 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 165 | 214 | 1.00E-113 |
| PF13041.9 | PPR_2 | 200 | 249 | 1.00E-113 |
| PF13041.9 | PPR_2 | 242 | 282 | 1.00E-113 |
| PF13041.9 | PPR_2 | 411 | 459 | 1.00E-113 |
| PF13041.9 | PPR_2 | 445 | 494 | 1.00E-113 |
| PF13041.9 | PPR_2 | 487 | 528 | 1.00E-113 |
| PF13041.9 | PPR_2 | 515 | 564 | 1.00E-113 |
| PF13041.9 | PPR_2 | 550 | 598 | 1.00E-113 |
| PF12854.10 | PPR_1 | 197 | 229 | 6.00E-104 |
| PF12854.10 | PPR_1 | 231 | 264 | 6.00E-104 |
| PF12854.10 | PPR_1 | 407 | 439 | 6.00E-104 |
| PF12854.10 | PPR_1 | 441 | 471 | 6.00E-104 |
| PF12854.10 | PPR_1 | 477 | 509 | 6.00E-104 |
| PF12854.10 | PPR_1 | 511 | 544 | 6.00E-104 |
| PF12854.10 | PPR_1 | 547 | 578 | 6.00E-104 |
| PF12854.10 | PPR_1 | 582 | 614 | 6.00E-104 |
| PF01535.23 | PPR | 203 | 232 | 1.40E-77 |
| PF01535.23 | PPR | 238 | 265 | 1.40E-77 |
| PF01535.23 | PPR | 414 | 443 | 1.40E-77 |
| PF01535.23 | PPR | 483 | 513 | 1.40E-77 |
| PF01535.23 | PPR | 553 | 583 | 1.40E-77 |
| PF01535.23 | PPR | 588 | 618 | 1.40E-77 |
| PF13812.9 | PPR_3 | 399 | 455 | 3.60E-52 |
| PF13812.9 | PPR_3 | 470 | 525 | 3.60E-52 |
| PF13812.9 | PPR_3 | 538 | 595 | 3.60E-52 |
| PF17177.7 | PPR_long | 177 | 290 | 1.30E-32 |
| PF17177.7 | PPR_long | 494 | 602 | 1.30E-32 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0006397 | mRNA processing | Biological Process |
| GO:0004519 | endonuclease activity | Molecular Function |
| GO:0005739 | mitochondrion | Cellular Component |
| GO:0005634 | nucleus | Cellular Component |
| GO:0016020 | membrane | Cellular Component |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR002885 | Pentatricopeptide repeat |
| trEMBL term | Description |
|---|---|
| A0A396GSF3 | _ |
| SwissProt term | Description |
|---|---|
| PP239_ARATH | Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G16890 | pentatricopeptide (PPR) domain protein 40 |
| Medicago sativa L. | MsG0880045352.01.T01 | _ |
| Oryza sativa L. | LOC_Os12g37100.1 | pentatricopeptide repeat domain containing protein, putative, expressed |
| Cucumis sativus L. | Csa000010 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000062s00005502.1 | _ |
| Codonopsis lanceolata | Cl_chr02_26290T | _ |
| Arachis hypogaea L. | AH07G20990.1 | Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial like |