Gene detail

Detail information of Am01G016360.1 Annotation

Gene ID	Annotation
Am01G016360.1	Zinc finger (CCCH-type) family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G016360.1	mRNA	Chr01	106369636	106372984	+

Sequences

CDS:

>Am01G016360.1
ATGGATTACAATCGTGACGGCAACGTCGTTCAAATTATCACCGGCGGTGGTGGTGGTGAAAGCTGGTCAACCGACCAAGCTGATTGGGCAACAGAAGACGAGTATCGATTCTGGAACGGTAACGATGGAAGCGAAACGACTCCGTCGAATTCGAATTGCGAACCGAGACAATCGCAATCGCGGTCGGGGAGTGAGCCACCGAGTAAGAAATCGAGGAGTAGCAGTTCACAGGACGGTGGTGGTGGTGGTGGTGGTGGTGGGGCGAATCGGTCGAAGGCGATTGGGAAAATGTTTTTTAAGACGAAACTGTGTTGTAAGTTTAGGGTGGGGGCTTGTCCTTATGTGACAAACTGTAATTTTGCTCATAGTATTGATGAGCTACGGCGACCACCGCCGAATTGGCAGGAAATTGTGGCGGCACATGAGGATGAGAGGGAGGAATTTCAGATTCCAACTGTTGGGTCTTCAAGTTTTGTGGGGGAAATGACTCAAAGGTCTTATAAGGGTAGACATTGTAAGAAGTTTTATACTGAAGAAGGGTGTCCTTATGGTGATAGTTGTACTTTTCTTCATGATGAACAATCTAAGAATCGTGAGAGTGTCGCGATTAGTTTGGGTCCTGGTGGTTATGGTGGTGGTGGTGGAGGGGGTAGTGGTGGTGGTGGTGGTGGTGGTGGGAGTGGTAGTGTTGTTGTTGTTGGTGGTGGTAGTGGTGCTGGGAGTGGTAGTGCTGTTGTTATTGTTGCTGGGAATGGAGCTAATTCAAAGCCTTCTAATTGGAAAACAAGGATTTGTAATAAGTGGGAGATGACTGGGTATTGTCCCTTTGGTAACAAATGCCATTTTGCTCATGGTGCTACTGAATTACACAGATATGGAGGTGGGCTTATGGAGGGAGAAAGCAGAGACTCTGCATCTGTTGTTGCGACCGACTCAAAACAAGGAGTACCTTCAAAATCTCATGCTGATAATGTGGTTGCATCGTCTACTCCTGTTGCTCATTCAGATGTTTATCATATTGGAGCCCCTTCACAAAGACCTTCCATTGTGAGTCAGAGACCAGGACAGAGAACTCATCAGAAATGGAAAGGTCCTGATAAAATCAGTAGGATATATGGTGATTGGATCGACGATTTCGAATAG

Protein:

Promoter(3k):

>AM01G016360.1
TGTACCAGAGGTGTTCGGATTGCCGACCAGTGGAGCCTAAATACCGAGAAGAGCTCTTGCCAACCGAGAAGGGGCTCCTGGAGAGCATAGTGGACACCTGAGAAAATGTGGACAGTACTAGAGGGAACATCTGTACCGCCTGCGCCACCTTAAGAACCATGCATAGACCAGGACGCGCTCGACTAGAAGACAAGCAAGGATGACGTGGCGGGCAACCATTGACTCGTACCGGGGGTAGTAACCATCTCACTACCTCGGTGGCAGGCAACAAATGATGCTACCCTATGGTATAAAACACTGTAGGGCCCCTTAGGTACAGAGGCGGATTCAAGGGGTGTTCCCTGTGTTCCCGGGAACACCCCAAATATCCTCTTTTAGTGGTAATACACCCCAAGTATATTGTCTTGGTGGTAATACATCCTGCCTTAGTGTCATTGAAGGAACACCCTATTTACTCCTGAAGAAAAAGGAACACTCAAATTTTGCATCCATTTGCACCAAAGACTCAAATTTCACTTACCCAAACACCACACACTTTTATTATAAAAAAAAACACCACACAATTGTGAAGACCTTTAATGCTAGTGTCACAGAACATACTTTGAAGATTTACTTCTACTGGGCTGGAAAAGGAACCATTGGCATACCAATAAGAGGAGTTTATGGACCTTTAATATCTGCTATTTCAGTGGATCCTAGTAAATCACATCCTGCATCTTCCCGTTACTTAGTTTTTTTATCAGCGTAGACAATTTGGCAAATAAACACTACAGACACACTATCGCACGGTCACATCTGGGTTTGAACCCGAAAGTCGGTGCCCCCATATTGCTGAATTTGTTAACGCAACCAGCAGTGGGGGATTACTGTCATTATGAAATGTATAATTTATTTATTTAAATATATTATTGTTGTTTTTAATTATATTTTTAGCAAATTGTGTATTTAAAAAATTTGACACCCCCGACTCCGGGGTCCTGGGTCCGCCACTGAGGAACACCCTATTCTAAACTCCTGGATCCGCCCCTGCTTAGGTAGTATAAATAGTGCATGCTATTGTTGTATTAATTATCCCTTTTCCTCATACTTGGGAGGTCTTCCTTAGCAATGTTATCTTCTTAAGTGCAGCACCTCCTCCCCCATCTTGTACACGAGAACAAATACTCATTTTGGTCTGTGGCAAAAACTATTGTGCTCAATTGGGCCCATAAGTATTAATAAGTCGTGCGATACTGATACATTGGCCTTGTCCTAAAACGACTGGTACAATGCTTATGTGTATTTTTAACTAGTTAATTTAGTCCTTATATGCATCTAAGTGTAACACATCCCCAAGCCCTAAATTCCTATTGTAGGACCTTCGCGTTGTAAGTTTTGTCCTTACTGCCAAACATAATGGAAGTGGTCGCATGTTGGGTCTAGTTCTGGCAACCTTGATGAGTCATGTTGGAAATCAAAAAATATGAAGCTAACTTGGTTTTTTGGTTACAAAAAGTTTAGATGAGTTGGGCTCTGGAGGCTCACCAGGGTCAGGGCAGACCTCATAGCTCTTTGAGCGTTTACAGAGGTACTTACAGATCACTCACCACCAAAGAGGTCCTCACATCGGCAACGGGAGTTGAACTCACGCCCTTGCGGAGAATGAGCCAACTTCTTACCAACTAAGTCAACCTTCATTGGCCTATGAAGCTAACATGTAATCACAAAGAAAAACACATAAAAAAATCAAAATTGGAAAATAGAAAACAAATGACCTTACACAAGATGAACAATTAATACGGCAATAATGTAATATCAAGGACCGGACCGGATGCAGTGCAGTGCAGGTATCATATTTGTCAACGCCGAGCATTTTTAAGTTTTAGTCATGATGTTTCGTATCTTAGGGTTTTCGGTGGAGAAAACAACACAAGAAAACATTGAGTCATTTTGGGTTTTATTTTTAGGTCTTTCCTGTATTTTTCTATCTAGGGACCATTTTGAGTCGTTTTTAATTTGATTCTATCTCACTCTGTATTATATTAACATAGTGTAACAAAATAATAGTACACATAATCAAAATAATGGTGCACATTTGCTATAAATGAAGGTGACCATAAAATGAGTTCAAGTTAGTTAAAAATTACTTATGTTTTATACAACTAAATATAAGAATTTTTTTTAAAGATTTTCTAAAAATTACTTTGTATTCACGCTTGTTTTTGGATAAAAAATATTCACTCATCTATGAGTGCTTCTAGAGTGAGAGAGCAAATCAAATCTCTCACCGGTAAACCATCAAATATGACCGTAGGATATAGTATAAAAATTCATCAACGGTTAAGATTTAATATTTGTTGATTCGATCTTAACCACTCATAGCATTTTACACAAGATCCTACGGTCAATTTTAGTGGTTCACCAATAAGAGATTTGATTTGCTCTATCACCCTAGAAGCACCATGATCTATATCTCACTTCTTTTTCTAATAACCTTTTTACTTTTACTCTTACCTCATTTTCTATGATCCAAATATGCAATTACCCTAAATCTGATAGACAATAATAAATGTAAGGAAACAAATATTTGCCATAAAAGCAAAGAAATCAATAAAATAGTCTAGTTTACTCCACTCTCTCTCCGCTTCGGTTCTAGCAAATCTATCCAACCAAGCCAAGGTGGTGATGAAAATCTGGTCAGTTACAGATCTGGTTCCCCTTTTCAAACCCACTCTTTTTTAATGTATCTCCTTCCATTCCATCTATACCTTCAAAATTCAACAAAACTTTCCATTTTTCTACTTCTATTATCTCAGATCTATCTTCTATTGCCAGTTACCACCACGTGAATCAAATCTCATTATTTTCAGACAACTTCAGTAGCTTGGGGTAATACTAGGTAGTTACATGTTTCTTCAGACAAACAAACCAGCCAAACCTCGAAATTTCAGAAACAAGAATCGATAATCTATTTGCTCAATAATCCTGAAATAAAATTCGTTAGGGTTTTGATTTCAAGTA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00642.27	zf-CCCH	99	123	1.60E-21
PF00642.27	zf-CCCH	260	285	1.60E-21
PF18044.4	zf-CCCH_4	170	192	1.30E-11

Gene family

Gene family	Subfamily
Transcription Factors Family	C3H

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	Molecular Function
GO:0046872	metal ion binding	Molecular Function
GO:0001067	transcription regulatory region nucleic acid binding	Molecular Function
GO:0003700	DNA-binding transcription factor activity	Molecular Function
GO:0010629	negative regulation of gene expression	Biological Process

InterPro

InterPro term	Description
IPR036855	Zinc finger, CCCH-type superfamily
IPR000571	Zinc finger, CCCH-type
IPR045877	RNA-binding protein ZFP36-like
IPR041367	E3 ligase, CCCH-type zinc finger

trEMBL

trEMBL term	Description
A0A1S2YTM7	_

SwissProt

SwissProt term	Description
C3H56_ORYSJ	Zinc finger CCCH domain-containing protein 56

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G32360	Zinc finger (CCCH-type) family protein
Medicago sativa L.	MsG0880045166.01.T01	_
Oryza sativa L.	LOC_Os08g06330.1	zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Cucumis sativus L.	Csa002157	_
Glycyrrhiza uralensis Fisch.	Glyur000378s00022510.1	_
Codonopsis lanceolata	Cl_chr02_36710T	_
Arachis hypogaea L.	AH05G39040.2	Zinc finger CCCH domain-containing protein 56 like

Expression pattern