Gene detail

Detail information of Am01G015670.1 Annotation

Gene ID	Annotation
Am01G015670.1	RS-containing zinc finger protein 21

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G015670.1	mRNA	Chr01	101661640	101665837	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM01G015670.1
GGGGAAGAAGAAGGAGAAGAACCAAGGTGGTGGTGGTGGGGCGAGGGAGGATAATGTTAAACCGTGGTGATGGTGAGAAGAGGAAGAGATCTCGCAGAGAGAGATGGAGGGAGAAGAGGGAGAATAGGGGTGGGGGATGAGGGAGTGAGAGTGAGAGAGTCGCGGGGAGAGAGAAGGATAAGAGAGAGTAGGAGTGGAAGTGAGAATGGATGAGGGTATTTTGGGATTATTAGAAATAATGGAGAGTGGGTGTAATATCCTAGTATTTCAACCTTGGAAGAAATACCGAGACTTCCATAAATAGCATACATCAGAGTTCTAATCCGACTTAAGTGAACTGAACATGCTTAAGTCGGCCAATAATTCATCATAATATCCTTTAAAGTAATAAAGTTTCTCAAAGGAATAACTAAATGACAATGAAGCACTTGCCATAAGTCATTCATAGATTCTATTGTTCAAGTTCCCAAGAGCAGAATTCTTAAAAACGAAACTCAATTTCGATTACAAATCAAAAGTTAAAGTATCAACATTAAACTTGTTAGATAAAGTAACACTAGGGTAAGCTAGGCAAACATAAAAACTCGATCAATAAAGATCCTTCTATAACTTGTAGACCAAAACAACAACTACTTCTTCTCTGTTCGCTTTTGATTTCTCTACTCATCTGTAAAACACCACATTATAAATAGTGAGATAAAATCTCAGTGAGTTCTTTCGAGACCCCTCACCTTAAACTCTCGGTGTTTTACTTAACTTTTCTCTTATCTCAGCACAACCCCGAACAATCACTACGCGATTCCTCCGGTGAACCCACCTGATAATAGCTATTATCGAGTCAACTTATTCTGGGCTTAGGCTTAGGGCTCATGACTTCCCCTACCCTAGTATGCTCTTAACTTGGGATCGTCATCCCCTTTGGTGTTTTATGTTTTTACTTGACACTTTGGTCTGTTACTCACTCGATACAACATTACTCGGTTGGCTTATAAACCCTACTAGAAAATTTCTCTTGTTGCATCACAAAAATACATGATTTTTAACTCAACTTTGTTCAATTATCATTGGGAAGGGTTAAGAAATGGATTAGGGAAGGATTGGAGTCAAAAGGAATGGAGATTGAAGCTTTTAAAATTGGGTGACAGACGATCTCGCACGGACCGGGCCTCCTAGGCGCGCGGACTGGGCTTCCTGGCGAGTCAACAAAGTTGGCTGCCAGTTTGTGAAGCACGGACCGGGCTCCATGGGCGCACGGACCGTGCGTCCCCTACAGTTCAAAAATTGTCCATTCCAATGGCTCCAATGCCTCACCCATTCGACTCCTAACTCAACAACACTCAATAACAGCTCTATTGTCTATCCAAACAACCAATTTTCATGCATCCAAACATTCATATGGAACTACATCATGAGCATTCAACATGCAACACATTCCTCAACACAACTAGCTCTATTGTCTATCCAAACAACCAATTTTCATGCATCCAAACATTCATATGGAACTACATCACGAGCATTCAACATGCAACACATTCCTCAACACAACTTCCGCACATACATTGATTCAAAACCACATTTCAGCAAGTTTGAACAACTCAAATTCACATGCATTGCTAAAATTCTCAGAACAACAACATGCAATTACCAATTTATCATGAAAACACTAACACGGGTAAATAACTCACCTTGAAATCGAATTTAAAACACTAGCAAGCAAGATGAGATGTTCAATGCACCCCAAAAGCTACCCAAACTTCAAATTCGAAACTCAGCTACCAATCCCTCCTCCTTGATGATTCTAACCACAATGTGACTCCTAAATGCTGCAACCCAACACCCAAGACTAACATGCAACCATTTTTAGCTTCAAATCACACTTCCCATCCACATGCATGTTCGAAAATGGGGAGCGGAAGAGTTGATCCAACTGAAATTCTTTTGTGTTTTAACTAGTGCTCTATAGTCTAAGATGAAATGAAAGGGAAGAAGAGAAGGATTTGAATGGAGGTTGCTAAGAGGAATTTCATGAAGTGGGTTTTGAGTTTTTTCCTCTCTTTTCTTTCTCTTCCTTCCAGCTCTCTTTCTCTCAATGAAGAGAGTGTGTTGTGTTTTTATCAAATTGAGTGTAAGTTGTGAATGTGATGGTATGTTTATTCAGCTGAGGTTTAAGTGGTTTGTGTGGAAATTCCCACTTTGTCGTTATGTCATTCGCACCCCACTAATCCTCTTGTACACTACCCAAATTAATTCACATAAACTAGCAAACAATTGCATTCAATTATTTCATTTAGTCATGTATTCAAGCAAAATAAATCATCAATTATGAACTCAAATAATATTTAATCAACTCAATTAGCAACAATTAATTAAAATCATCTACTAATCACAAGAATTAGAATTAACCACTTTGGGGATGTTACCGGGAAAAAATTTTCTCTACATTTTCAGAAATTGTGATGTATTCTCGGATGTTGTAAATAATCCAGAGATGTAATTCTGATTGGCTAATTTACAAACATTATGAGAAAAATGAAAAAATGATATAGGATTGCATGTTAGCAAAAATAGGAGGTGTATTAATAATTAATTCCCTAGGCTCCCCAAACCGTAAAGTTTTTAATAATGGGCCATGAGAAAGCGTGAGAATTTACGGATACGCATATCATAAATTTAGTTCTCACACTACTCGGCTGCGATTTCTCATTTATCTCTCGATCATCCATAATTTTCGAGAACCCTTTCAGTAGCAGGTGATCTTTGATCTCATTCCACTCTTCTACGCCGCTAGTCCTTGTCTCTGCAACTGTAACCGTGAGATTTGGCCATTTACTTCTCAAACGCTCTTTTTGTAACTACCCTAATCTTTGTTTTTGCGCTTAATCTTCTTTCGCAACTAGTTGCATAATTTAACTCATTTATTTGTATTTCTATTTTTGTGATTATTGTTTGCCTTTTTGATTTCAAAATAGATTTTTGTAGGGTGATTGTGGTTTTGGGACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00076.25	RRM_1	4	61	2.20E-15
PF00098.26	zf-CCHC	93	108	1.40E-07

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0016607	nuclear speck	Cellular Component
GO:0003723	RNA binding	Molecular Function
GO:0006397	mRNA processing	Biological Process
GO:0042802	identical protein binding	Molecular Function
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR036875	Zinc finger, CCHC-type superfamily
IPR001878	Zinc finger, CCHC-type
IPR035979	RNA-binding domain superfamily
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily

trEMBL

trEMBL term	Description
A0A5N5HF35	_

SwissProt

SwissProt term	Description
RZ21A_ORYSJ	Serine/arginine-rich splicing factor RSZ21A

KEGG

KO	Description	Enzyme
K12896	serine/arginine-rich splicing factor 7

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G23860	RS-containing zinc finger protein 21
Medicago sativa L.	MsG0880045042.01.T01	_
Oryza sativa L.	LOC_Os06g08840.2	RNA recognition motif containing protein, expressed
Cucumis sativus L.	Csa002074	_
Glycyrrhiza uralensis Fisch.	Glyur003084s00034090.1	_
Codonopsis lanceolata	Cl_chr01_20820T	_
Arachis hypogaea L.	AH16G35160.1	Serine/arginine-rich splicing factor RSZ22 like

Expression pattern