Gene detail

Detail information of Am01G015210.1 Annotation

Gene ID	Annotation
Am01G015210.1	SIN3-like 4

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G015210.1	mRNA	Chr01	98657267	98668035	+

Sequences

CDS:

>Am01G015210.1
ATGCTTCTTCCCACCACAGCCCATTTTCTCAAGATTTGGCTTTGGTTTGGTGATCTGTTTGCAATCCAGGGTTGGAATTCTTGCTTAGAGATGAAGAGGTCCAGAGATGATGTTTACATGAGTTCACAACTCAAACGACCTATGGTGTCTTCTAGAGAAGAACCCTCGGGGCAACCACAGATGATGAGCAGTGGTCAGAAACTAACCACAAATGATGCATTATCATATCTCAAGGCAGTAAAAGAAATGTTTCAAGATAAGAAGGAAAAGTATGATGACTTTTTGGAAGTCATGAAGGATTTCAAGGCCCAAAGAATTGATACAACAGGTGTCATAGCAAGAGTGAAGGAGCTGTTTAAAGGGCATAGAGATTTAATTTTGGGATTTAACACCTTTTTGCCAAAGGGATATGAAATCACTCTTCCATTGGAGGATGAACAACCTCCACAGAAAAAGCCTGTTGAATTTGCAGAAGCTATAAATTTTGTGGGCAAGATCAAGGCTCGTTTTCAAGGCAATGATCGTGTCTACAAGTCTTTTCTAGACATATTGAATATGTACAGGAAGGAAATTAAGTCTATCACCGAGGTTTACCGGGAGGTTGCTGCTCTTTTCCAGGACCATGCAGATCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATACTACAGGAGCTGCCTCTGCTCATTATCCTTCTGCTCGAAATTCTCTCCCTCGTGACAGGAGCTCCGCGATGCCAACAATGAGGCAAATGCATGTTGACAAGAGAGAACGAACCATAGCTTCGCATGGTGATCGTGACCTCAGTGTTGATCATCCTGATCCAGAACTTGACAGAGGTTTGATGAGGGCAGATAAAGAGCAGAGAAGGCGCAATGAGAAAGAAAAGGACCGTAAAGAAGAGAGAGATAGGAGAGATTATGATCATGATGGTAGTCGGGAGCGTTTATCCCACAAGAGGAAATTTGGTCATAGAGCTGAAGACCATGGTGCCGAACCATCGCATGATGCAGGTATGTGTATTCAAGAGCTTGCTTTCCTTGAAAAAATCAAGGAGAAATTAAGAAATCCCGAGGATTACCAGGAAGTTTTGAAGTGCCTGCATATCTACAGCAGAGAAATAATCACCCGACAAGAACTACATACATTGGTGGGTGGTTTACTGGGGAAGTATGCTGATATTATGGACGGACTGGATGATTTTTTGACACAATGTGAAAACAATGAAGGATTCCTCGCTGGTGTCACGAATAAAAAGTCCTCGTGGAATGAAGGACATGGACCAAAATCAGTGAAGTTAGAGGACAAGGACCGGGATCATGACAGGGATGAGAGGGTGAAAGAAAGGGACCGTGAATATCGAGAAAGAGACAAATCCACTGCAATTGCCAACAGGGATGTCTCAGCTCCTAAGATGTCTCTATATGCCAGCAAAGACAAGTATGTAGGAAAACCTATAAATGAGCTGGACCTTTCCAACTGTGAACAATGCACTCCCAGTTACCGTCTTCTACCAAAAAATTATCCGATACCGATAGCTAGCCAGAGAACTGAACTTGGTGCAGAAGTATTGAATGATCACTGGGTTTCTGTTACTTCAGGAAGTGAGGACTATTCCTTTAAGCACATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGACAACTAGGAAAATCGAAGATCTGTTAGAAAAGATTAATGCTAATTTAATCAAAGGAGACAGTCCTGTTCGTATTGAGGAGCACTTGACAGCCTTAAATCTCAGATGCATTGAACGATTGTATGGTGACCATGGGCTTGATGTGATGGATGTGTTGAGGAAGAATGCATCTCTAGCTTTGCCAGTCATATTAATCCGCTTGAAGCAGAAACAGGAGGAGTGGGAAAGATGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAATTATCACAAATCACTTGATCACCGTAGCTTTTACTTTAAGCAGCAGGATACGAAAAGCTTGAGCACTAAAGCCTTACTGGCAGAGATCAAAGAAATTAGTGAGAATAAACGAAAAGAAGATGATGTTCTTCTTGCAATTTCTGCTGGAAATAGAAGGTCCCTTCTTCCTAACTTGGAATTTGAGTATCCTGATCCTGAGATTCACGAAGATTTGCATCAACTTGTAAAATATTCTTGTGGAGAAGTTTGTACAACTGAGCAGTTGGATAAAGTCATGAAGATTTGGAGAACATTTTTAGAACCTGTGCTTGGTATTCCTTCTCGACTGCATGTTCCCGAAGATACAGAAGATGTTGTCAAGGCTAAAAACAATTCTTCCAAAACTGACACTGCAAATATTACTGAGGGTGATGGTGGTCCTAAAAAACCAAGCACTAGTAGAGACGGGGATGAATCAAATTCTTGCAAAGAATGGCAAACACATGGGGATGGTGAGGTTAAAGAGGATAATTGTCTTGAATCAGATCGTTCTGCACCTAAGACTGAAACTTTGGGAAGTAGTACGCAGCAGGGTAAAATGCATATAAGTGCATCTATACCTGATGAACTATCTAGAGTCAATAAGCAAGATCATTCCATTGAACGGTTGGTGAATGCTAATGTCTCACTGTCCTCTGGAATGGAGCAAAGTAATGGAAGAACAAACATGGACAATGCATCAGGACTTACTGCAACTCCGTCTAGAGTTGATAATGGTTCTGGTGAGGCAGTGCTTGATTTACCTTCATCAGAGGGTGCTGATTCTACAAGACCAGTTACATCCACAAATGGGGCCATCACTGACGACACCAAAGTTCACAGATATCGCGAAGAATCAGTTGGAGACTTAAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGAGGATAACTTTGCAGTTTATGGAAATGCTGGCCTGGAGGCAATGCATAAAGGAAAAGATTGTAGCACACAATACCAAAATAGACCTGGGGAAGAAGTTTGTGGAGAAGCCAGAGGAGAAAATGATGCTGATGACGATGTTGAAGGAAGCCCTCATAGATCATCAGACGACAGTGGAAATGCTTCTGAAAATGGCGATGTTTCTATTACTGAGTCTGGTGATGGGGAGGAGTGTTCTCGAGAAGAAAACGAAGAGGGTGGGGATCATGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGATGTCAATGATGCTGAAGGAGATGGAGCCTCATTGCCATATTCAGAGCGCTTTCTTCTCACTGTAAAGCCTCTGGTAAAACATGTTCCTCTAGTGTTGCATGAGAAAGAAAGGAAAGCTCGAATTTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTATATGAGAGGATACGGTCCGCAAAGATTAACTCATCGTCTGCTGAAAGGAAATGGAGAGCTTCAAATGATACAAGCTCTGCTGATCAATATGGCAGGTTCATGAATGCCCTTTACAATTTACTGGATGGTTCTTCTGATAATGCAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAGTCATACCTCTTGTTCACGTTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCTCTGAAGAGATGGATAACAGACTTCTTCAACTATATGCATATGAACAATCAAGAAAACCTGGAAGCTTTGTTGATATAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAATATATATCGTATTGAATGTTCACCTGCACCTACTCGAGTGTCTATTCAGTTGATGGACTATGAACACGATAAGCCTGAAGTGACTGCCGTGTCGATGGATCCTGATTTTTCAGCCTATCTCCACAATGATTTCCTATCTGCTGTCCCCGACACAAAAGAAAAATCAGAAATATTTTTAAAAAGGAATAAACGCAAATCTTCTTGCAGTGATGAATTTTCAAGCCACGTCATGGATGGACTACAAGTTATGAATGGTCTAGAGTGTAAGATAGCTTGCAGTTCGTCGAAGGTTTCATATGTTTTAGATACCGAAGACTTTTTATTTCGAACAAAAAGGAAAAGGAGAACTTTGCATCAGAACAATTCATGTCATGAACTGGCAAAGTCTTCAAACATATGTTCAAGCAGAGCACAGCGGTTCTGCAAATTATTTTCCATCAAATGA

Protein:

>Am01G015210.1
MLLPTTAHFLKIWLWFGDLFAIQGWNSCLEMKRSRDDVYMSSQLKRPMVSSREEPSGQPQMMSSGQKLTTNDALSYLKAVKEMFQDKKEKYDDFLEVMKDFKAQRIDTTGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAINFVGKIKARFQGNDRVYKSFLDILNMYRKEIKSITEVYREVAALFQDHADLLEEFTHFLPDTTGAASAHYPSARNSLPRDRSSAMPTMRQMHVDKRERTIASHGDRDLSVDHPDPELDRGLMRADKEQRRRNEKEKDRKEERDRRDYDHDGSRERLSHKRKFGHRAEDHGAEPSHDAGMCIQELAFLEKIKEKLRNPEDYQEVLKCLHIYSREIITRQELHTLVGGLLGKYADIMDGLDDFLTQCENNEGFLAGVTNKKSSWNEGHGPKSVKLEDKDRDHDRDERVKERDREYRERDKSTAIANRDVSAPKMSLYASKDKYVGKPINELDLSNCEQCTPSYRLLPKNYPIPIASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTRKIEDLLEKINANLIKGDSPVRIEEHLTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILIRLKQKQEEWERCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISENKRKEDDVLLAISAGNRRSLLPNLEFEYPDPEIHEDLHQLVKYSCGEVCTTEQLDKVMKIWRTFLEPVLGIPSRLHVPEDTEDVVKAKNNSSKTDTANITEGDGGPKKPSTSRDGDESNSCKEWQTHGDGEVKEDNCLESDRSAPKTETLGSSTQQGKMHISASIPDELSRVNKQDHSIERLVNANVSLSSGMEQSNGRTNMDNASGLTATPSRVDNGSGEAVLDLPSSEGADSTRPVTSTNGAITDDTKVHRYREESVGDLKSEREEGELSPNGDFEEDNFAVYGNAGLEAMHKGKDCSTQYQNRPGEEVCGEARGENDADDDVEGSPHRSSDDSGNASENGDVSITESGDGEECSREENEEGGDHEHDNKAESEGEAEGMADVNDAEGDGASLPYSERFLLTVKPLVKHVPLVLHEKERKARIFYGNDSFYVLFRLHQTLYERIRSAKINSSSAERKWRASNDTSSADQYGRFMNALYNLLDGSSDNAKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAVASEEMDNRLLQLYAYEQSRKPGSFVDIVYHENARVLLHDENIYRIECSPAPTRVSIQLMDYEHDKPEVTAVSMDPDFSAYLHNDFLSAVPDTKEKSEIFLKRNKRKSSCSDEFSSHVMDGLQVMNGLECKIACSSSKVSYVLDTEDFLFRTKRKRRTLHQNNSCHELAKSSNICSSRAQRFCKLFSIK*

Promoter(3k):

>AM01G015210.1
GCAAGATTTTTGGTGATTTTGGTACCACATGCATATGCCCGTTGGTGTGGGTTGCATTCATGCATCGTCATGACATTTGGTGACTAGTTGAGATTGTTTATAATTTGATGTAATGTTATAATTTAAGCGTGTTTATGATTTGATGTGCGTAGTGAGGTGGTAGTCATAGCTGTTGTACTCTAGCATAATTCCTATCATTTTATGCTATTATATTGAAGATATCTCACCCCTTTTGTTTGAATGTTACCCCTATGCGGTAACGCGCAGGTGATTGCGAGTGAAGGCTTAGGTACCTTCGCTATTCTGAGTCGGTGTCCTTGCTTTGATGTGTAACACTCAGGGGGGGATAAACGCTGAACTTAGTCGTTATATTTTTATTGTTTGGAGTCCATTCAGGACATCACGATTTGATTGTTTTTAAACTTATTATTATTTCCGCTGCGTGGTGATGTAATTTTTGGTGATGTGGTTAATTAAACAGGTGTTATGGGCTTAGTCCCTTTTCGACAAGTTATTTATATCGCTTGAGACATTTTTATTTAGTAATGAATGTGTGGCATCCTTTTTCGAATTATGAATTAAAATTTTTGTAAACTCTGATTTTGTTGAATAATTACCGGGTAGAAAAGGGGTGTTACAACGTCCATAATGGTGGGGGTGACCATGCCCCAAGGGAATATAAAGGCATTGAAGTTAGACGACCAGAAGCCCAAGAGAGGAAAAAGAACGTCAAAATTATGGGGAATGGCGAAGGTAGAGAGAGCGATCATGTCACGAAGGCCCCACGCTTTCCAATCATCTTTCTTGACAGGATGGATCCTGTCGAACCAGGCATGGTAGTCTTCGGTGGGATTGGCCCAACCCCTAGTTTCTGACACCTTGGCATCAAAGGTGAACCAATCTTGGGTGATTGGTATGTCGGGACAAGCCGAAGCGTTGAAGATTTGTTTGAAGGCGTTAAAGTCGTCGCGGACAGCAGAGGTAGTGGGCCGAACTGTAACGCCGCCTGAAACGGCAACAAGGATATCATGTGGGGAAACTTCAGAGGGAATGGTTGCCAAAGATGGACCAGAGGAAGAAGAACTCGGCTGACTATCATCTCCACCACAACTGTGTTCACGGTTTTGAGAATCTGAGTTTGAAGACATGGTGGAAAGAAGTGTTGATAACAATGGAGGAGAAGGGTTTTGGTTCGGGGAAGAAGAAACTAAAAAAGGAAAGTGAAACGTTTCAAGAGAAGTGAACAGTTTTGCGTGGCTGTTGCTATTTATGATTTTGCAAACCTCGAGAACCATCGCGCCGCCCTATTATCCCGTGCAAAGAGAAATGCCAAGTGTCGCGAAACGGAAGGCTAGTCGCTTCAAACGGTCACATCAAGTCATGTCAAAGGGTTTTTGCGCTATCAGTCACGTTCTCGCGGCCATACGACAACACAAAAAGGGGGGCCATTGTTAACACCCAAAAATAGCTAGGTCACAGGCCGAGGGCTGAGTGAAGGAATGGAGTAGAATTGGAGTGCTGAGGCAGGCCACTTGACAAAGGTTTGAGAGATAATTGCCAGAGAGAAGAACTCAAGAGAAGCCCTCAGGGCATACCACAAGACAACTCCCCGAGGAAGGGGTCAGCCCGAGGAGCAATAAGCAAGGCCGAGGGAGAGAAAAACCTCAGCCTATGGAGTGCCACGGCCAAGGTGGGCTCGGGTGCCTAAGTTACTGTCCAAGGACGAAGGCTAGCTGAGCAAGCCTAATGGTTGAGGTAAAGCAGGCTTGCTTGGAAGGCAAGTAAGAGGGAGCACGAAGACAGAACGTGGGAGGAGTTGAAGATCAATCGAAGGAGCGAAGCCCTGAAAAGCGGAGTGAGGGAGTTACACCCCACTAACCGTGCTAGTGAAATCGTGGGTTGTTACTCCGCCTCCTTAGGGCTTAGGAATGATGATAATCTTAGGTTGATCCAACGGTAGGCAAATGTTGGCTGTGTTAGTGGCCGACGAGGGCCTACGTATATAAATAGGAGAGCAATTACACATCAATCAAACCAAAACTCTATGTTTATTTTTATCTATCTTCTTTATCGCATTTTTATCTTTATTTTTATGCATTAGCCAGTAGTATAATCCAAACTTCGCAGTCCCCCTTCCCCAACCCGGCCCTTTCTAGAGGAGTCAGAATACTCACAGTTAAAGAGCAGAGTTCCCTCATTGGCACAATCGCTTGAAGAACAGAGGAATCAAAACACTTGTTCAAACCTCTGGCCGAATCCACGGCTAGGACCTAAGAGTTTGACACAGAGAAACACGAATATAATATTAATCAACAATGCATATAAATTAAAATTAAGATAATATGCCCTCATTAATTTTTTTTAAAATCATTTTTAAATACAAAAATCACGAGTTATTTTTGTTAATTTTTCAATGTATATAAAAATCATGGAAGACCCTATGTTAGATTATTGATCTTTGTGACTAACAGGGGATTGTTGTTCTTTGTCATGGGAGGACATCTCATGGTCCGATGTCTCTCAAAGTGTCTAAGGCCATCCATTATCCAATGTGTGGATGTGTGTGTGTCATCTAAAAAGGGATGTAATTTTTCCTAATACCATCACATTTTTTTATACAACTTAATCAATACCATCATTTTCTTTTGATAAAATATACCGGCATATTATTAATTATTAATAATGTAAAAGTATATTTACAAGGATTTGCAAGTAATTGTCAAAAAAAAAAGGATTTGCAAAACTGCCGCGAGATCACAGCAAGACCAAACCCTAATCCCTAAACCAAACACCTAATTCATAACAAGCAATCCCCTTATTTACAATTTTACCCCTCCGTCCACCATCATTTATTGCAATTCCCAAATTGCCCCTCCAATATTGAAACCTCCCATATAATCTTGATCAGATTAACCCTAATTAAGAAAAACTAAAATAAGGTAAAAAAAGTAATTTCCAAAAAAAATAAGATAAACAAATAAATAAATAAACATCAAAAAT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF16879.8	Sin3a_C	1123	1369	6.80E-60
PF02671.24	PAH	89	133	7.80E-40
PF02671.24	PAH	176	219	7.80E-40
PF08295.15	Sin3_corepress	495	585	1.00E-35

Gene family

Gene family	Subfamily
Transcription Factors Family	Others
Epigenetic Regulators	SNT2

Gene Ontology

GO term	Description	Category
GO:0003714	transcription corepressor activity	Molecular Function
GO:0045892	negative regulation of DNA-templated transcription	Biological Process
GO:0000118	histone deacetylase complex	Cellular Component
GO:0000785	chromatin	Cellular Component
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process

InterPro

InterPro term	Description
IPR039774	Transcriptional regulatory protein Sin3-like
IPR031693	Sin3, C-terminal
IPR036600	Paired amphipathic helix superfamily
IPR003822	Paired amphipathic helix
IPR013194	Histone deacetylase interacting domain

trEMBL

trEMBL term	Description
A0A9D4XER5	_

SwissProt

SwissProt term	Description
SNL4_ARATH	Paired amphipathic helix protein Sin3-like 4

KEGG

KO	Description	Enzyme
K11644	paired amphipathic helix protein Sin3a

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G70060	SIN3-like 4
Medicago sativa L.	MsG0680030660.01.T01	_
Oryza sativa L.	LOC_Os01g01960.1	transcriptional repressor, putative, expressed
Cucumis sativus L.	Csa012578	_
Glycyrrhiza uralensis Fisch.	Glyur001626s00034620.2	_
Codonopsis lanceolata	Cl_chr01_21900T	_
Arachis hypogaea L.	AH05G10880.1	Paired amphipathic helix protein Sin3-like 4 like

Expression pattern