| Gene ID | Annotation |
|---|---|
| Am01G013970.1 | cold shock domain protein 1 |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am01G013970.1 | mRNA | Chr01 | 81636656 | 81652382 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF08284.14 | RVP_2 | 243 | 373 | 7.20E-39 |
| PF00078.30 | RVT_1 | 488 | 641 | 5.10E-24 |
| PF17919.4 | RT_RNaseH_2 | 660 | 728 | 1.90E-20 |
| PF17921.4 | Integrase_H2C2 | 840 | 897 | 1.30E-18 |
| PF17917.4 | RT_RNaseH | 670 | 749 | 3.00E-16 |
| PF03732.20 | Retrotrans_gag | 8 | 84 | 1.10E-12 |
| PF13975.9 | gag-asp_proteas | 265 | 355 | 9.80E-10 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0003676 | nucleic acid binding | Molecular Function |
| GO:0006278 | RNA-templated DNA biosynthetic process | Biological Process |
| GO:0003964 | RNA-directed DNA polymerase activity | Molecular Function |
| GO:0004190 | aspartic-type endopeptidase activity | Molecular Function |
| GO:0006508 | proteolysis | Biological Process |
| InterPro term | Description |
|---|---|
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR001878 | Zinc finger, CCHC-type |
| IPR041577 | Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain |
| IPR000477 | Reverse transcriptase domain |
| IPR005162 | Retrotransposon gag domain |
| IPR041588 | Integrase zinc-binding domain |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR021109 | Aspartic peptidase domain superfamily |
| trEMBL term | Description |
|---|---|
| A0A396IBK7 | _ |
| SwissProt term | Description |
|---|---|
| YI31B_YEAST | Transposon Ty3-I Gag-Pol polyprotein |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT4G36020 | cold shock domain protein 1 |
| Medicago sativa L. | MsG0080048390.01.T01 | _ |
| Oryza sativa L. | ChrSy.fgenesh.mRNA.17 | expressed protein |
| Cucumis sativus L. | Csa017297 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur001556s00043257.1 | _ |
| Codonopsis lanceolata | Cl_chr06_01380T | _ |
| Arachis hypogaea L. | AH12G26480.1 | Transposon Ty3-G Gag-Pol polyprotein like |