Gene detail

Detail information of Am01G013830.1 Annotation

Gene ID	Annotation
Am01G013830.1	cyclic nucleotide-gated cation channel 4

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G013830.1	mRNA	Chr01	79133612	79150928	+

Sequences

CDS:

>Am01G013830.1
ATGTCCACCAGTAGCAGCACAATAACAGAGCAACACATCTCACGTGCTTCACACATGCACGATTATACCTCCACGACGGACGAAGAAAAGGAGAGCGAGGCAGAGGTCCACCTTGATGAAGAAGAACAAGAGGAAGAGCTTCAAGGAGAGAATGACGAAAAGATTAGCACGTTATGGCAGAGGTGGTATATGGGAACATCTTCGAATCGGGTCGTAGACCCGAAAACAAAATGGGTTCAAGAATGGAATAGAGTGTTCCTGCTAGTATGCGCTGCAGGGTTGTTTGTCGACCCACTCTTCTTTTACTCTCTTTCCGTTAGTTACTCCTCTATGTGTCTCTTCGTAGATGGTTGGTTCGCCGTTACTGTAACGGTTCTCCGTTGCATGACCGATGCTTTACATCTATGGAACATCTTCCTTCGGTTTAAGATGGCAAAATGGCCTTTCGCTTTCACCACTGATAACGCCGTTGTAGATAATCATGGTTGTTCTATCGCTCTTGACTATCTCAAATCACGCCGGGGATTCTTATTCGATTTATTTGTTATTCTTCCTATACCTCAGATTGTGCTTTGGGTGGCAATCCCCTTTCTTTTGGGGAAAGGTTTGGTTACGTTGGCAATGACCGTGTTGTTAATCATGTTTCTCTTTCAATACCTTCCCAAAATTTATCACTCTGTATGCCATCTGCGTCGCACACAAAACCTCTCTGGATACATATTTGGAACCGTTTGGTGGGGTATTGCCCTTAACATGATCGCTTATTTTGTCGCTTCCCATGCTGCAGGGGCATGTTGGTACTTGCTAGGAGTCCAGAGGGCAGCCAAATGTCTCAAAGAGCAGTGTGAGAAAACAAATGGTTGTGGCATTAAAATCCTGTCTTGTCATAAGCCAATATATTATGGAAGTAGTAGCTTGTTGGATAGGGATAGAGCAAGGTTGTTGTGGGCAGAGAACATGGAAGCAAGGTCCACGTGCTTAAATGGTCCTGATAACTACAACTACGGAGCTTATAAGTGGACTGTTCAACTTGTCACTAATGATAATCGATTAGAAAAGATACTTTTCCCTATCTTTTGGGGACTAATGACTCTCAGCACTTTCGGGAACTTAGAAAGCACAACGGATTGGCTAGAAGTGGTTTTCAACATCATAGTATTGACGAGTGGCCTTCTTCTTGTCACTATGTTGATCGGAAACATCAAGGTGTTTTTGCATGCAACAACATCAAAAAAGCAAGCAATGCAATTAAAGATGAGGAATATTGATTGGTGGATGAGAAAGAGGAGATTACCACAAGGGTTTCGGCAGCGCGTGCGCACGTATGAAAGACAACGTTGGGCTGCTATGCGTGGGGTTGATGAATATGAGATGACTAGAAATCTTCCTGAGGGTCTAAGAAGAGACATCAAATACCATCTTTGTTTAGATCTAGTGAGGCAGGTGCCACTATTTCAACATATGGATGAGCTGGTTTTAGAGAATATCTGCGATCGTGTAAGATCTCTGATATTCACAAAGGGTGAAACAATAGCTAAAGAAGGTGATCCAGTTCAAAGGATGCTATTTGTAGTGAGAGGCCATCTTCAGAGCAGCCAAGTTTTAAGGGATGGGGTGAAAAGTTGTTGCATGTTAGGACCAGGAAACTTCAGTGGGGACGAGCTACTATCATGGTGTTTGAGGAGACCCTTCATAGAACGCCTTCCACTATCAACATCCACACTTGTCACACTTGAAACCACTGAGGCATTTGGTCTTGAAGCAGAGGATGTCAAGTATGTCACACAACATTTCAGATACACATTCGTGAAGGAAAAGGTGAAGAGAAGTGCAAGGTATTACTCACCAGGGTGGAGAACATGGGCTGCTGTGGCTATTCAATTGGCATGGAGAAGGTATAGGCATAGGTTGACTTTGACCTCATTGTCGTTTATAAGGCCTAGGAGACCCTTGTCACGATGCTCTTCTTTGGGAGAGGATAGGCTTCGCCTTTACACTGCTTTGTTGACATCTCCAAAGCCTAATCAAGATGATTTTGATTTTTGA

Protein:

Promoter(3k):

>AM01G013830.1
ATTCAAGCTCAAAAGAAAGCTTAGGATAGCGTTTAGGAGCGAGCTCATAGTGGATTACGCGAATATGGAAGTCCGATTTGGGGTTTTTGAAGAATCAAGAGGTTAGGGTTCAAATTGGGGTTATGTGTGAATAGTGACTTGGAGGTTGAAGATGATGAATAGTACTTTATAGAGGCCTCGTGATTGAGCGGAAAGACTGGAAGCGGATTTGGGCGTCGTCGGAGCGTGGGAGTTTATGCGGGGATTGTTCGTGTGGTTATGTGGAGATTTTGAAGTCTCGGTGATTTCGGCCCGGTATCGACTCTCGTTTCAAGGGTGAGTTTTACTCACGCTTAGGATGTTTTTGTGTCTCATTAGTTTTTACGTTAATTGATTTCGAGAGATTTTGAAACGAAAACCGTTATTTGAAAATATGTCGCGTTTTGATACAATTCGATTACAATGAGTTTTTGATTGATTTGATTGATTGTGCGACTTTGATTGGGACTGTTTTTATGGTTGTCAAATCTGTTTTCAATCGGAACGAGAATCGGAATTGAGCGGAATAGCGGTTTTCGCGCGAAACCGCCACAAAAATTCACTTACAGCTGGTAAAAGCGCCCCAAGCGCTCGGCCATGCGCCCAAGCGCACGAGAGGCAGAACCAAAACTGTCCAAAGCGCCCCAAGCGCTCGGCCATGCGCCCAAGCACACGAGAGACAGAACCAAAACTGTCCAAAGCGCCCCAAGCGCTCGACCATGCGCCCAAGCGCACGAGAGACAGAACCAAAACTGTCCAAAGCGCCCAAGCGCACGACCCGTGCGTCCAAGCGCACAGTGCAAATTTTCAGCAACTATTCACTGATTTTGTTTTCGCGATAAATTTTGATCCGGGAACCCGATTGAGGTGTTCTAAGATGCGTTTGAAAGCTTATTCAGAGGCCTAACTGAATATTTTATTTTTAAGGCATAATGAACTGTTTTTGAAGTTATAGATTGTTTTGAAAAACCGAATAATAGTACACGTGTGCAGATATGTTTTATTAATAATAAAGCGGACTATGAGTCCTACGTGGTATGGTATAACTGACGCGGGATGATTATTATTTATTCGTCTTAACCGGTCTACGATTCACGATATATATTATATCGACTATGGGAAACGGCCCAATGCGGGTATTGTGTTCGATTAACGGTCTAATGTAAATGAACTAAATGTTCATGTGAAAGTAGATATATATACTATATCGAGTTTGGGTGACGACCCATGATGTTAACATACTAGGCGGGGTAGTCATGATCCCTTACCCTAGGCCCCGTGCCATTAGGGAAAGTACTATTGGTAAGGGGGTTCGCCGGGAGTAGCGTTCGCGCAGTCGGTGTTATGTTGAAAGTTATGCGTTACGTTCACCGGGAGTAGCATTCATGCAGTCGGTGGTACGTAAAAAGGTCTTATACCGCGGCTCACCGGGAGTAGCGTTCGCGCAGTCGGTGTTGCAATAAAAGTTAAACGATACGGGTCACCGGGAGTAGCGTTCGCGCAGTCGGTGTCGTATCAAAGGTCATGTGACACGAGTCACCGGGAGTAGCGTTCGCGCAGTCGGTGTTGTACTGAGTTATAGCAGGTTCGCCGGGAGTAGCGTTCGCGCAGTCGGTGGAATGCTATGTGTAAATAATGCGGTTCATCGGGAGTAGCGTTCGCGCAGTCGGTGCCGTGTTGAGTTAAACAGGTTTCAAAAATTAAACCGAGAGTATTAGTAGAGGTCTCGGTAGAACTCACTGAGATTGTATCTCATTGTTTATATGTTGTTGTTTTACAGAGAAACAGGGAAAGAAAAGACCACAGAGGCACGAGTAGGTAGAGCTCGGATGGTTGCTGATGACTTAGCTTTATGCTTAAGTTTATATTTCCTTTGTTGTCTATGTACTGCAACACTATGTATTTAGTGTTATATCTTTCTTCCGCTTTCTTGTATGATACTGAATACTATAGCTGTTGATGGTTTATGGTCTGAGAACCGTATCGTCTTGTTTGTAAATAAGACTGTTTGGTTTATATTCATCAAAAATTTATAGTGATATTCAGTGTTTAAGCAGGAAATATATATCTGATGTTCTAGGGATGGTACACTTGGGTGTTTTTATTAAATAAAAATACCGGGGTGTTACATTATTCAATTGAGCAAATCAAATTTTCTATGTAATATCCCTCAACTACTAAGTTCCATGTTCTTTTGGAACCCTTTAACTTCCTCATTACACTTTCCTTGTGGCATGGTGACCATTACACTCCTTGATGTAGCGAGGCTGGTCGGTTTGAAACCCCCGGGAGATCTTTTTACCTTCGGCCTTCGACCAGATCATCCTGTTACTGTGAACATGTCTTCAACAAGCTGCGGTCAATTTACCAGGAATAACATGAAGGATTCCACCATTGTGTTTGATGAAGAACACATGGAATTTTTACTAAATTAGCTCTGATACTCTTTTTTGTGTACTTGGTCAATCTCGGTTGGGCTTAGTTACCTTCCCTTAGCCATTTTACTACATGAGGGCAAGAACATCAGCCTTAGCAAAATCCTTCTGGCAAGTCTCTACGAGTCCTTGGGCATCGTCTATGAGGAACTCTTGAAGTTCGGTTATATTCCGTCTAATATGGCATGCCCTTTGTGGCTTTTGCAGTTACGGGTAAACATGACCGAAGTTGAAGGCTTCTCGAATCAGAAAAAAGGCTTCTTCCTATAATACTGTGAGAAATTTTCTGATGAGTGACGACACTCTCACCGAATATCATAATAAAAACCTATAATAATTTTGTCTTAAATTTTTATAAGTATTAAATTATTTTAATGTTAAGAAACAGAAAAAACATAAAGCTTTCCACCTCTTAAAAGATATCACAAGACTGAAACCAAATAAAAAAATATATAACTAATTAATTACACACGTTCCTCTTATTTGTGCCCTCTTGCTATTTGAAATCCATCACTTGAAACAAAACTCCATCTCTCAACACTCCATC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00520.34	Ion_trans	82	401	1.30E-10
PF00027.32	cNMP_binding	505	592	2.00E-06

Gene family

Gene family	Subfamily
Transporter family	VIC

Gene Ontology

GO term	Description	Category
GO:0016020	membrane	Cellular Component
GO:0030553	cGMP binding	Molecular Function
GO:0034220	monoatomic ion transmembrane transport	Biological Process
GO:0005216	monoatomic ion channel activity	Molecular Function
GO:0005516	calmodulin binding	Molecular Function

InterPro

InterPro term	Description
IPR014710	RmlC-like jelly roll fold
IPR005821	Ion transport domain
IPR018490	Cyclic nucleotide-binding domain superfamily
IPR000595	Cyclic nucleotide-binding domain

trEMBL

trEMBL term	Description
A0A9D4XJZ5	_

SwissProt

SwissProt term	Description
CNGC4_ARATH	Cyclic nucleotide-gated ion channel 4

KEGG

KO	Description	Enzyme
K05391	cyclic nucleotide gated channel, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G54250	cyclic nucleotide-gated cation channel 4
Medicago sativa L.	MsG0880044558.01.T01	_
Oryza sativa L.	LOC_Os05g42250.1	cyclic nucleotide-gated ion channel 2, putative, expressed
Cucumis sativus L.	Csa019759	_
Glycyrrhiza uralensis Fisch.	Glyur001720s00031703.1	_
Codonopsis lanceolata	Cl_chr03_38680T	_
Arachis hypogaea L.	AH13G20320.1	Cyclic nucleotide-gated ion channel 4 like

Expression pattern