Gene detail

Detail information of Am01G013540.1 Annotation

Gene ID	Annotation
Am01G013540.1	3-hydroxyacyl-CoA dehydrogenase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G013540.1	mRNA	Chr01	74125059	74128346	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM01G013540.1
AAGCAAACCTAGGCCAAAACACTTGATAGTTTTCTTACACAGCTCTATCTATTGCCTCACTAGTTTTCTTGCACAGTTCTAATAACTGAAAAAACACTAAGAAACTACTTAGGAAACTTCTCTAACAATCAAGCAAGCCTATGCCATGTTAAGAAGGTACAAAGATAAGGTAAGGTTTAGGATTCTGGTTGGAAATACAATAGCTTGGGTAAAAAGTGAGATTCTGATAGAACCTAACCACAATAGCTATGAGCATACTATGAAAAAGTTCACAGAAGATCTTTTGTAAGCACTGAGTGTGGTAAAGAAGATATATGATCTTGAGAAGCTACTTGAGAAGATAGGCAGATTGTAGTATACTGTCAAAAAACTTAAATGAGGTCTTCCTTGGTGTATTTATAGAGATTGAACCTCAGTATACTCGTTGGAGATGGCCCCATAAGTCAATATAGCCTTTGGTTCATTATGCAGAAAATTTGTTGTACTTTCCTGCACTTCTGCAGGAACTTTGTACTTGCAGCACAATGGCTATCTTCTCATTCCTAATGCTTCTTAGCTTGAATTTGACAAATTGGATGCTTCACTTAATTTGTCTCGTTTTTTCTTATGTATTTATTATCCTTCATAAATGTGTCTGACTCTTAAGAAGATGTGTCTATGTGCCTTCTGATTCGTAAGAAGCTTTTGATGATGTATCTTTTGATTCCCGAGAAGCTTCTTACACTAACTTTTCTTTTGTCAAAGAATGTTCTTAACTTTTCTTCTATCCTTGAGGGGCTTCTTGAATTGAGTCTTCTAATCCTAAGAAGCTACTTGACTTGACCCTTCTCATCTTGAAAAGCTACTTGGCTTGTATCTTCTCATCTTGAGAAGCTTCTTGAAATGTATCTTCTCATCATGAGAAGCTACTATATTTGTCTTGATTTTTCTATCTTCTCACGATCTGTAGGTCTTCATTCTTAGCTTCTAAAGCCTCATTTATCCTTCTCATAAGGTGCTATCCTAGCACATAACATCTTGAGACTTGATTAAGTAGGTCCTGTACTTTTGACACTCAAGAAGATTCATTATAACACTAAGGAATCAGAAAACTCAAACACTTATAAAAAAGGCTTAATTCTATCAAAACTTAACTTAGGGATTTTGCCTCAACAATAAGCACATAGAGACCAAGTATCACTTCATTCAATACCAGGTCAGAAAAGGAAAGCTGGAGGTGAGCTACTGCAACACCGAGTGCCAAGTTGCAGACATATTCACTAAACCTTTGAAGTGTAAAAGGTTTAGGGAGTTGATGAACTGGTTGAATTTAGTGTCTTTAAATCATTGAATTACATGGGAGTGTTGTGAGTAACTTGATGATCACATGTAAGTGTCACAACTTCTTAATTTGTTAGTTGTATTTCGATTAGTGTTATGAATCATTTTGTTATATTTTTTAAGTAGATTGTTTTTTTTTTTAAAAAATTGGGGAAGGGGGAAATTTTTATTAATCAAAGTGGTACTAATAACATTTTTACAACTGTCCCCGAGGGGATTTGAACTCAGCACCTTAAGGATATAAGACTAGCTCTTACCACTGAGCTAGCACCTCAAGTGTAGTAGATTGTAACTAATATGATAGTATATAAAAGTATAGGATGTAATATTTACAAGTTAGAGTGAATGCTAACTACATTTCAGTTTTCCAGCATCATAATTTCTCTGATTCTTTCCCCTCTGTCTCTTTGTGTTCGTGTGTGAGTGTGAACATTGTGTGAATGTTCTATGTGTTTTCAACATTCCAAACGACAACACCCTACATTACAAAAATTAGATTCATTTATAAATTTGTTGTTCCTATTTTTGTAGTTTTAAAGTTCCTCTTTTAATTTTTTGTTCCAATGTAGACGTTTATGTTGCAAAATAATGACATGATGTGGTCACTAATTTATTTGTTGTTTTGACATGGTCTTTATTTTGTAAAATTTATCCCAAAATAGTTTCTTTGTTATTCCAATACGGTTCTTTATTTTACAAAATTTATGTCAATATGGTCTTTTCCGTACAATAATTTAAACGAAAAAGACCATATTGTTATTACTTTGCAGAATAAAAGACCATTTAAAATTGGAATTAAAATAAAGATAATTTGCAAAGTTAAAAAATAAGAGATCAAAAATATAAAGCTTAATTGCATTTTTAGTCCCTATGATCACTCAAAAAGTTATAAGGGTTCCAAAAGAACTTTTTCCAGTTAATTTCATGATTTTCATAACTAAGAATTCAATTGTATGAAGGTTTTTGTCAAAAAAAGGAAACAAATTGTATGAAGGTTATAATTAGGTCCCGTAAAAATTAGTGAATGCAATCCGGTTATATAAACTATACCTTTTTGCCTTTCATTTGAACCCAGGACTTACTTATTGCACTCTTTCAGTATTATTTAGCTTGTTGCTCGCCAATTGAACTACCTACTTGGGACAAAAACTATTACAACTAGATAGATAATTGTTGATGAATGAGTTGAAATTACTAAATTCTTTCATCTCAGAGATTGGAAGTGGTGAGTCGCAAACTTAATAATTCAAAGTCTAAAAAATAATGTTGATGAAATGGGGGAAAACCCGGTACAAATGTGTTTTTTTATTTAACATAATATTAATGATTTTAAAAATAAATTGTTATAGTAATTTTATTTTAATTTTAGATTCCATTTGGCAATGTAGCTTGTTATGCCACGTAAGATAAGAGGGAGATCAACATGGTGGGAAAAAAAATTGCAAACTAAAATTGTAAATAAGTAATTATAGGGAAACTAAAATTGCAATTAACCCAAAATATAATTTAACATTTCATTTTTTTTTTGACAATAACCTTTGAAAGTTAATTAATATATATACTATGCCGTCATGGTCTTTGGCTCTTTGCTGGTCAGTTTTTTTTTTTATTTTTGTTTATCTAAGCTAGTCTCCTTTTTAAAAAGAATAGAAGATAATAAATAAATGTAAAAAGAAGAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02737.21	3HCDH_N	7	184	7.60E-63
PF00725.25	3HCDH	187	283	5.60E-35

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0006631	fatty acid metabolic process	Biological Process
GO:0016020	membrane	Cellular Component
GO:0004300	enoyl-CoA hydratase activity	Molecular Function
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Molecular Function
GO:0008692	3-hydroxybutyryl-CoA epimerase activity	Molecular Function

InterPro

InterPro term	Description
IPR036291	NAD(P)-binding domain superfamily
IPR008927	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily
IPR013328	6-phosphogluconate dehydrogenase, domain 2
IPR006176	3-hydroxyacyl-CoA dehydrogenase, NAD binding
IPR006108	3-hydroxyacyl-CoA dehydrogenase, C-terminal
IPR006180	3-hydroxyacyl-CoA dehydrogenase, conserved site
IPR022694	3-hydroxyacyl-CoA dehydrogenase

trEMBL

trEMBL term	Description
A0A2Z6NSP4	_

SwissProt

SwissProt term	Description
HBD_BRADU	3-hydroxybutyryl-CoA dehydrogenase

KEGG

KO	Description	Enzyme
K00074	3-hydroxybutyryl-CoA dehydrogenase	[EC: 1.1.1.157]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G15290	3-hydroxyacyl-CoA dehydrogenase family protein
Medicago sativa L.	MsG0880044418.01.T01	_
Oryza sativa L.	LOC_Os01g58380.1	3-hydroxybutyryl-CoA dehydrogenase, putative, expressed
Cucumis sativus L.	Csa015836	_
Glycyrrhiza uralensis Fisch.	Glyur001292s00040215.1	_
Codonopsis lanceolata	Cl_chr04_26290T	_
Arachis hypogaea L.	AH13G21830.1	3-hydroxybutyryl-CoA dehydrogenase like

Expression pattern