| Gene ID | Annotation |
|---|---|
| Am01G012960.1 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am01G012960.1 | mRNA | Chr01 | 68833508 | 68836087 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 47 | 93 | 1.40E-60 |
| PF13041.9 | PPR_2 | 147 | 195 | 1.40E-60 |
| PF13041.9 | PPR_2 | 248 | 296 | 1.40E-60 |
| PF13041.9 | PPR_2 | 356 | 402 | 1.40E-60 |
| PF01535.23 | PPR | 49 | 75 | 1.20E-56 |
| PF01535.23 | PPR | 150 | 177 | 1.20E-56 |
| PF01535.23 | PPR | 358 | 388 | 1.20E-56 |
| PF14432.9 | DYW_deaminase | 571 | 663 | 9.80E-42 |
| PF20431.1 | E_motif | 473 | 535 | 9.70E-24 |
| PF20430.1 | Eplus_motif | 540 | 565 | 1.50E-07 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0008270 | zinc ion binding | Molecular Function |
| GO:0009451 | RNA modification | Biological Process |
| GO:0043231 | intracellular membrane-bounded organelle | Cellular Component |
| GO:0003729 | mRNA binding | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046849 | E+ motif |
| IPR046848 | E motif |
| IPR032867 | DYW domain |
| trEMBL term | Description |
|---|---|
| A0AAN9SSN6 | _ |
| SwissProt term | Description |
|---|---|
| PP172_ARATH | Pentatricopeptide repeat-containing protein At2g27610 |
| KO | Description | Enzyme |
|---|---|---|
| K23541 | Ca2+/H+ antiporter, TMEM165/GDT1 family |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT2G27610 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Medicago sativa L. | MsG0180005975.01.T01 | _ |
| Oryza sativa L. | LOC_Os01g25270.1 | pentatricopeptide repeat protein PPR986-12, putative, expressed |
| Cucumis sativus L. | Csa008650 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000793s00026506.1 | _ |
| Codonopsis lanceolata | Cl_chr03_05410T | _ |
| Arachis hypogaea L. | AH06G09860.1 | Pentatricopeptide repeat-containing protein At4g13650 like |