Gene detail

Detail information of Am01G011280.1 Annotation

Gene ID	Annotation
Am01G011280.1	DEA(D/H)-box RNA helicase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G011280.1	mRNA	Chr01	51954776	51980356	-

Sequences

CDS:

>Am01G011280.1
ATGCATAATCCAAAATCCGCAGCTTCTTTTCTTATAACTCGCGCCAAGTCCCTGCAACTTCACTACAATCACCATCATCACTCTCTCACTTCGACTTCAAAGTCAAACTTAATCAAGTTTCGACCTTCGCTTTCTTCCTTATATATTCCCAAATCCTTCCTCACTAATCGCCTTTTCTCTAATTACTACGGTCTAGAGCAGTTCTCCGATGATGAATATGACTGTGATTTCGAAACTCACCAGGCATCATCTACAGTGGCCAATGTGGATGAGTGGAAATGGAAACTCAGTATGCTGTTGCGCAATGAAAAGGATCAGGAGATTGTATCTAGAGACAAAAAAGATAGGAGAGACTATGAACAAATAGCTAACCTTGCCAAAAGAATGGGACTTTACAGTGAGATATTTGGAAAAGTGGTTGTTGCTAGCAAGGTGCCCCTTCCTAACTACCGACCAGATTTGGATGACAAACGTCCACAAAGAGAGGTGGTGATTCCATTAAGCTTGCAAAGGAGGGTTGAGGGCTTGTTGCAGGAATACCTTGATAGACTACAATTAAATTCTGGAAAGACAACTGACTATCTGGATAATGCGAAGTCCACCAATCAGGTTAAAGATGTAGACATGGATGAAAATGCTGATTCTTATGTGGATGAATCTGTTATGGAAAAGGTTCTCCAGAAGAGGAGTTTGAGGATGCGTAATATGCAAAGAACTTGGCAGGAATCACCTGAAGGCAAGCAGATGCTGGGATTCCGAAAGTCTCTACCAGCTTTCAGGGAGAAGGAAGGTTTACTTCAAGCTATAGCACGTAATCAGGTAATAGTTGTATCTGGTGAGACTGGCTGTGGTAAAACCACACAACTTCCTCAATATGTATTAGAGTCAGAGATAGAGTCAGGCCGCGGAGCATTTTGCAGTATTATCTGCACTCAGCCCCGAAGGATATCTGCCATGGCTGTGGCTGAGAGAGTGTCAGCAGAGAGAGGAGAGTCTCTCGGTGATACAGTTGGTTTCAAAGTTCGATTAGAAGGAATGAGAGGGAAAAATACCCACCTGCTATTTTGTACCAGTGGTATATTACTCCGAAGGTTGCTGAGTGATCGAAACCTGAGTGGTATAACCCATGTTTTTGTGGATGAAATTCATGAAAGAGGCATGAACGAAGACTTCTTACTGATTGTGCTGAAGGATCTTCTTCCACGTCGCCGGGATTTAAGATTGGTATTAATGAGTGCTACCTTGAATGCGGAACTTTTTTCGAATTATTTTCGAGGTGCGCCAACATTTCATATTCCGGGTTTCACCTTTCCTGTTAAAGCTCACTTTTTAGAAGATGTTTTGGAAATGACTGGATATAAGTTGACTTCCTTCAACCAAATTGATGATTATGGTCAAGAAAAACTGTGGAAAACACAAAAGCAGATGGCACCACGGAAGAGGAAAAACCAGATCACTGCTCTTGTTGAGGATGCTCTTTCTAAATCAAACTTTGAGAACTATAGTCCCAAGACACGTGATTCTCTATCTTCTTGGGCACCTGACTGCATAGGATTTAATCTCATTGAGGCTATTCTATGCCATATATGTCGGAAGGAAAGACCAGGTGCTGTCTTAGTATTTATGACTGGGTGGGAGGATATAAGCTGTTTAAGAGATCAGCTTAAAGCACATCCCCTTTTAGGAGATCCCAATAGAGTTCTGCTTCAAACATGTCATGGTTCAATGGCAACTTCAGAACAGAAACTTATATTTGAGAAAGCACCTCCAAATGTAAGGAAAATAGTACTTGCTACAAATATGGCAGAGGCAAGTATTACGATCAATGACGTAGTTTTTGTGATAGACTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTGAATAACACGCCATGCTTATTACCCTCTTGGATATCACAAGCTTCTGCACGGCAGAGAAGGGGTAGAGCTGGTCGTGTGCAGCCAGGAGAATGCTACCACCTTTTCCCCAAATGTGTTTATGAAGCCTTTTCTGAATATCAACTTCCTGAACTATTGAGAACGCCCTTGAACTCTCTTTGCTTGCAAATAAAAAGTTTGCAGGTTGAGAGCATAGGAGAGTTCTTATCATCAGCTTTGCAGGCACCAGAGCCACGGGCTGTCCAAAATGCTGTTGATTTTCTGAAGATGATTGGAGCATTAGATGAAAAGGAAAGTCTTACTAATCTTGGGAAGTTTCTTTCGGTGCTTCCTGTAGATCCCAAGCTGGGAAAAATGCTAATAATGGGTGCTATATTTCGGTGCTTTGATCCTGTTCTAACAATAGTTGCGGGCCTTAGTGTCAGGGATCCTTTCCTTTTGCCCCAAGACAAGAGGGATTTAGCAGGGACAGCAAAGTCAAGGTTTTCTGCTAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCATACGAAGGATGGAAAGATGCTGAAAGAGAAGGTTCAGCTTATGAATACTGTTGGAGAAATTTTCTCTCTGCTCAAACTCTTCAGGCAATTCATTCACTCCGGAAGCAGTTTGGCTTCATCTTGAAAGAAGCTGGCTTAGTAGATTCAGATACAAGCATCAATAACAAATTGAGTCATAATCAGTCTCTTGTACGGGCAGTCATATGTTCTGGGTTCTTTCCAGGCATAGCATCAGTTGTGCACAGGGAGACATCCATGTCATTCAAGACAATGGACGATGGCCAGGTTTTGTTATATGCAAATTCGGTGAATGCACGTTACCAAACCATTCCTTACCCGTGGTTGGTTTTCGGTGAGAAAGTAAAGGTCAATGCTGTTTTCATCCGTGATTCCACTGGTGTATCTGATTCAATACTTATCCTTTTTGGTGGTGCTCTAAGTAATGGAGTACAGGCTGGGCATCTGAAAATGTTAGATGGGTACGTTGACTTCTTCTTGGATCCTAATTTAGCTGACTGCTATTTGAAGCTCAAGGAAGAGCTCGATAAGCTTATCCAAAAGAAGCTAGAAGATCCTGACATCGATATTCACAAGGAAGGGAAGTACTTGATCCTTGCTGTTCAGGAACTGGTTTCAGGGGATCAGTGTGAAGGAAGATTTGTATTTGGCCGTGAAAGTCGAAGGCCTAAGGCTTCTAATGATGAGAATAAATTCACAAAAGATGGGACAAACCCCAAGAGCTTGTTGCAAACACTTTTGATGCGAGCAGGGCACTCCCCACCAAAATACAAAACAAAACATCTCAAGACTAACGAGTTTAGGGCATTGGTTGAGTTTAAAGGAATGCAATTTGTTGGCAAACCGAAAAGAAACAAGCAGCTTGCAGAAAGAGATGCTGCTATAGAGGCATTGGCTTGGTTGACTCACACCTCTGACAATGTTCAGCATGAAGATGATAAGTCTCCTCCTGATAAATCAAACTTACTCTTCAACCGGATTCAAAAAAGGAAATCTTTGAGTGAAATTTTATTGTCATACCTTGTTTTAAAATGA

Protein:

>Am01G011280.1
MHNPKSAASFLITRAKSLQLHYNHHHHSLTSTSKSNLIKFRPSLSSLYIPKSFLTNRLFSNYYGLEQFSDDEYDCDFETHQASSTVANVDEWKWKLSMLLRNEKDQEIVSRDKKDRRDYEQIANLAKRMGLYSEIFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEYLDRLQLNSGKTTDYLDNAKSTNQVKDVDMDENADSYVDESVMEKVLQKRSLRMRNMQRTWQESPEGKQMLGFRKSLPAFREKEGLLQAIARNQVIVVSGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMAVAERVSAERGESLGDTVGFKVRLEGMRGKNTHLLFCTSGILLRRLLSDRNLSGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFRGAPTFHIPGFTFPVKAHFLEDVLEMTGYKLTSFNQIDDYGQEKLWKTQKQMAPRKRKNQITALVEDALSKSNFENYSPKTRDSLSSWAPDCIGFNLIEAILCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLQTCHGSMATSEQKLIFEKAPPNVRKIVLATNMAEASITINDVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLFPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSSALQAPEPRAVQNAVDFLKMIGALDEKESLTNLGKFLSVLPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFGFILKEAGLVDSDTSINNKLSHNQSLVRAVICSGFFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGVQAGHLKMLDGYVDFFLDPNLADCYLKLKEELDKLIQKKLEDPDIDIHKEGKYLILAVQELVSGDQCEGRFVFGRESRRPKASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNVQHEDDKSPPDKSNLLFNRIQKRKSLSEILLSYLVLK*

Promoter(3k):

>AM01G011280.1
AATAAATAAAAAAACCTCCCTTTTTATCAATTCCCTTTGAATCCGTTTTCCGGTGGGATGAATTTTTGAGAGATAGTGCCTTTACTATCTCCAGCAAAGTTGTTCTTGGAGCATAAGAGAGGTTTACATAAAAGACCCCTAATACATACCATAATCCGTGTTTGAGAAGCGCGGTTGAGAAGTTGCATTGAGGCCATGAATGTTAGATTTAAGAGCGTAAACTGACGTTGCCGGTAGCATAAGAGGAGCAGAATCTGACCACAACAGAACACAACACATATTAAGAAACAAAATAAAACACCAAAACCGGAAGAGGTCTCAAAGAAGAAGAAGAAGAAAATATAAGTACCGTTTTTATAGCGAGAATGTGAAGGGGCTGTATCGTAATGTCGAGGAAGGAACACCCCAGTTCCACCGCAACCCCTTTTCACTGAAGATCCACTGGGTAAAACAACCCGTGAACCGGATCCACCAAAGTGTAACTGGTGATGGGTGGTAGAGAGAGAGGAGTTGGCAACGGAGACAGGCGGGCGGGGAGGAGATGAGTTTGGCTGCGATGAGGGCGTGGGACTCATGGTGGCGACTTCTTCTCTTCTTTCTCGCGCGGGTATAGAGAGGGAGAGAGATATGGCGACAGAGGCCTTTAGCCACATGGGTGTGGGTTTTGGCAGTGAGGGAGATATGGGGAAAGAGATCGAAGGAAGGGATTGAGAGGAAAAGGAAAGAAGGAGGAAAAGTATTCTCTTAATGGTTTTCCACTGATACACGTTTTTCCCTCACAAGAGATGACAAGCTCACAAATTTTTTACCAAAGCTGAGAATGAAGAAAGACATCTGACAAGTTCACATGGGGTAATATAAGTACCTGACAAGTTCACATGGGAGAAGGGTGGGATGACGTGGAGCCAACGTCGGCAGCGATCAAGTGGCCGGAAAATTGGAGGGAAACTGTGGGAAGTTGGCGCCATGAGCTACTGTAGTGCCGACGTGGAGACACCCTCCGGATGTAAATTTTTAGATGTGCCACAAAGTTAATTAAAAGTTCATCTTTAAAAAAGTTAATCAAATGAGTTATTTCATTAATAGATTATAATAACATTAAGTTTTTTTGACATAATAACAACATTAAGTTAATCATTTCAAAATAATAATATTAAGTGAGCAATGCTATTCAGCCAAATATTTTTAGACAAAAATAGACAAAAACCACATTACAACATCAATTAACCAAGTTTTTTAAGCAACTAACCAACCTACTTTTTCACAGTTTTCTATGTCATTGACTAAAAACCAATGTTTTAAAACTCGGACCGGTGACCGACTCGGTGAAGGTACCGGGTCACTGGGTCAAGGGTCGGACCGAGGGGTCGACAGTTAAACCGCATGACCAAAACTCGGACCGCATGACTCGGACTCGGTCTCTATTTCGCGAATTTTCAAGACCTATATAAATTTCGTATCTGTAAAACTTAATCCTGACAAGAAAAATCTAACAAAAATTCACCACAAATTGCGTATGTGTATTATCTTTTTTTTTAAACTCTTTGCATATGTGTATTATTATCGCTAGCACACTTTTAGTAGATTGATAATATCATATTACAGTGGTGGCACTGGCAATCCAACACCACTATCCATATTCTCATTTTTAATAAAATTAAAATTAATAACATATGCTCTGTCACTCTGTTGTTATAGCCGCACACCTACCATTAAAAAAGAAATTAAAGATACAACTTTTTTTTGAGATTTGTGTTTTTTGACCAGATTTTTTGAGATTTGTTAATGACACAACTTTACATCTCTCTCACTCTTGTCACTTTTCTACTTTCCTTTCTCATCTTGTCACCTTCCCTCCCTCGACTCTTTCTTTCCTCAATTTTTTCTGCAAGCTTCATTCTTCCATGGCCATGCAAACGAGTCTCTTCTCTTCTCATCTCTTTCTCTGTTTGTTTCTATTTTAGTTTTTTTTTTATCGCAAAACGACGTCGTTTGGCCTTGATAAGAGATTTTTTTAAAAACGTGGAAAAACCGGTCCGGGTTGCGCGAACCCACCGAGTCACCGAGTTTTTAGCAAAACCGGCCGGTTCATGGCGGTTCAGGGCGGTTCAGTGCATTTCCGATCTGGGGGATGGTTCGATTCGGTGAACCCACCGGTTCCCGGTTCGCCCGGTCCGACCGGCCGGGTCGAGCCGGGTTTTAAAACACTGCTAAAAACTATGAAAAAATAGGTTGGTTAGTGGCTTAAAAAACTTGGTTAATTGATGTTGTAAGATGGTTTTTGTCTATTTTTGTCCCAAAAAATTTGGCTGAATAGTATTTCTCATATTAAGTTGATAGTGTAAGGAATGCACTTTAAATTAAGTGAATAGTTTTTTTTTTAATAAATCGAGTATTCTCTGCGTGCAGCTGCAGAAACTAATCTCTTAAACTGGGCAGGACCACGATCGGCGGCAAAACTCTTCCTTAAGAAGAAACCCCTACCATCTCATCTAAGGGCTCTTAAGTAATTAAGTGAATAATTATATTTTTTTGGATACCATCTCATTGGTGCGTAGTTTTCACCGGCTTTACCGGTGATTAATCTACGCTGGGAAACCTGGCTGGCCACGAGTACCCAACTTTGCCGACCCGTGTGGTTATCCGCTCACAACAGAGTTTTTGCCACAGAGTTTTTGGTCCAAGTCCAGTTACCACTTGGACCAACTCTTTTGGTAATTAAGTGAATAATATGAAATTGCATTTGCAAATATTAAAAAGAAATTCTTGCTAAAAAGTGAAAAGTTTTGAAAAATCAATATAAACGAAACAGCCTGAATATTCATGGGTCAGGTCGACCCGAATCCGATTCACTTTCAGAATCTCCCTCTCCATCTTCTTCGTTCTTTCTCTCTTACTGCAGTGCCAGTAGCATTCACAATCCTCTGCCCAAAGCAAAATAAAGCATCATAGCAATATTAGCAAAACCGCGATGCCTCAACCTCACTACTCCAATAAACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04408.26	HA2	718	804	3.90E-20
PF07717.19	OB_NTP_bind	874	955	4.90E-15
PF00271.34	Helicase_C	523	654	2.30E-14
PF00035.29	dsrm	1055	1117	1.20E-06
PF00270.32	DEAD	267	417	2.60E-06

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003724	RNA helicase activity	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0005524	ATP binding	Molecular Function
GO:0003723	RNA binding	Molecular Function
GO:0016887	ATP hydrolysis activity	Molecular Function

InterPro

InterPro term	Description
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR007502	Helicase-associated domain
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR014720	Double-stranded RNA-binding domain
IPR011709	DEAD-box helicase, OB fold
IPR011545	DEAD/DEAH box helicase domain

trEMBL

trEMBL term	Description
A0A1S2YWS7	_

SwissProt

SwissProt term	Description
DEXH3_ARATH	DExH-box ATP-dependent RNA helicase DExH3

KEGG

KO	Description	Enzyme
K14442	ATP-dependent RNA helicase DHX36	[EC: 5.6.2.6]
K21843	tetratricopeptide repeat protein 7	[EC: 5.6.2.6]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G04895	DEA(D/H)-box RNA helicase family protein
Medicago sativa L.	MsG0180005905.01.T01	_
Oryza sativa L.	LOC_Os03g17432.1	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
Cucumis sativus L.	Csa004488	_
Glycyrrhiza uralensis Fisch.	Glyur000768s00019897.1	_
Codonopsis lanceolata	Cl_chr01_26380T	_
Arachis hypogaea L.	AH14G02480.1	Uncharacterized protein like

Expression pattern