Gene detail

Detail information of Am01G010780.1 Annotation

Gene ID	Annotation
Am01G010780.1	nuclear RNA polymerase C2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G010780.1	mRNA	Chr01	48286543	48324839	-

Sequences

CDS:

>Am01G010780.1
ATGGCTCTCGAAGGCTATCCTCCACCAGAACCCACCAAAGAGTTCAATAAGGGAAACGCTTTTGGTGATTGTGGCATGGACAAACAGTTTCTAACTGCTCCAGTGAAATCTGCTGTGGACAAATTCCAGCTTCTTCCTGAGTTCCTCAAGATTAGAGGATTGGTGAAGCAACACTTGGATTCCTTTAATTATTTTGTCAAAACTGACATGAAGAAAATTGTTCGTGCTAATGACACTATCCGGTCGCATAAATTCCCGCATATTTATTTAAGGTTTTTGAATGTCAGAATTGATAAGCCGTCAATAATGATAGATGGTAGCTCTGAGGACATTACCCCACAAAAATGCAGATTATCCGACCAAACGTATGCTGCTCCGATAGTAGTTGATGTCGAATACACTCAAGGAAGTCCTGATAACCTAAGAAAAGAAACAAAGACCAATGTTGTTATTGGGAGAATGCCTATTATGTTGCGGAGTTGTTGTTGTGTCTTGTATGAGAAAGATGAAGCTGGACTTGCACAAGATGGTGAGTGTCCCCTTGATCCCGGAGGATATTTTGTAATTAAAGGGACTGAAAAGGTGATTTTAATACAAGAGCAACTTTCAAAGAATAGAATAATTATAGACACCGACCAGAAACGAAACATTACTGCATCTGTTACAAGCAGCACGGAGAAAATTAAAACAAAAACCGTGATTGTGATGGAAAAAGAGAAGATGTGGTTACAATTGAATCAATTTCCTAAGAAGGTTCCTCTTATGATCGTAATGAAAGCTATGGGGATGGAAAGTGATCAAGAAATCATACAAATGGTTGGAAGAGATCCGCGTTATAGTTCGCTACTTTTACCATCGTTTGAGGAATGTAGAAAAAGTGGTGTATATACGCAAGAGCAAGCATTGGAGTATCTTGATTCAAAGGTAAAACAGTTCATGAATTCAAACACGCAATCTGAAAAGGAACGAAGAATAATTTCTGTCCTAAGAGATGTATTTCTTGCAAATGTACCGGTTCATCAAGATAATTTTCGGGGAAAATGTATCTATGTTGCTGTTATGATGAGACGCATAATGGATGCAATTCTAAATAAGGATAAGATGGATGACAAGGATTATGTGGGGAACAAACGATTGGAGTTATCTGGCCAGTTAATATCTCTTCTTTTTGAGGATCTTTTTAAGACAATGATAGCTGAAGTTAAGAAAGGGATAGATATAAGGTTGGATAAGCCAGACAAGGCTAGCAGGTTTGATATCTGTCAGCTTCTTGGTCGAGAGGAGATTACTAATGGTTTGGAAAGGACTCTCTCCACTGGTAATTTTAATGTTCAAAGGTTCAGGATGGAAAGGAAAGGAATGACACAGGTGCTGCAGAGGTTATCATTTATAAGTGCTTTGGGCCAAATGACAAGAGTCTCACCACAGTTTGAGAAGTCCAGGAAAGTAAGTGGTCCTAGAGCCTTGCAGCCAAGCCAGTGGGGCATGCTTTGTCCCTGTGATACTCCTGAAGGTGAAGCTTGTGGACTAGTAAAGAACCTGGCTTTGATGACTCATGTCACTACTGATGAAGAGGAGGGACCCCTGATTTCTCTTTGCTATGTATTGGGTGTTGAAGACGTGGAATATCTCTCTGCAGAAGAACTTCATACACCAGATTCCTTTCTTGTCATTTTTAATGGATTGATCCTTGGCAAGCACAGAAGACCACAGAGTTTTGCTACTGCAATGAGAAAGTTGCGGAGAGCTGGTGTAATTGGCCAGTTTGTGAGTGTCTATGCCAATGAAAAACAGTCTTGTGTTTACCTAGCTTCTGATGGGGGTAGAGTTTGCCGTCCTCTTGTCATTGCTGACAAGGGAATATCAAGAGTGAAAGATCATCATATGAAAGAGTTAAAGGATGGAGTGATAAAATTTGATGATTTTTTACGTGATGGCTTGATTGAGTATCTTGATGTCAATGAAGAAAACAATGCTTTGATTGCCTTATATGAAGGAGATGCGACATCAGAAACTACCCATATTGAGATTGAGCCTTTCACTATCTTAGGAGTTTGTGCGGGGCTAATTCCATATCCTCATCATAATCAGTCACCCAGAAACACATATCAGTGTGCAATGGGGAAGCAAGCAATGGGAAACATAGCATATAACCAGCTTAGCCGGATGGACACCTTGCTTTACCTACTGGTTTATCCTCAACGACCTTTGCTGACAACAAAATCAATTGAGCTGGTTGGATATGATAAGCTTGGAGCAGGTCAGAATGCGACGGTTGCTGTAATGAGCTATAGTGGTTATGATATTGAGGATGCAATTGTCATGAACAAGTCATCTCTTGATCGAGGATTTGGTCGCTGCATAGTTATGAAAAAGTCCACCGTTGTCAATCAAAAGTATACGAATGGCACAGAAGATCGAATACTTAGGCCCGATAGAACTGCCCCGGACGCAGAACGTATGCAGATACTTGATGATGATGGGCTTGCCGCTCCGGGTGAAATTCTTAGGCCAAATGACATTTATATCAACAAGCAATCACCCAGAGATACAAAAACTGATATCAGAGGATCTGCCGCAAATTTGCCCGATAGTGCATATAGAACCGTACAACAGACATTTAAAGGTAATGGAGGTGAAGTAGTTGATAGGGTAGTTCTTTGCTCTGATAAGAATAGCAACATGTGTATCAAATTTATGATCCGTCACACTCGTAGGCCTGAGCTTGGTGATAAATTTAGTAGCAGACATGGACAGAAAGGTGTTTGTGGAACAATTGTCCAGCAGGAAGACTTCCCATTTTCTGAGAGAGGCATTTGTCCGGATCTGATTATGAATCCTCATGGGTTTCCAAGTCGAATGACAGTTGGAAAGATGATAGAGCTTCTTGGAGGGAAAGCCGGAGTTTCATGTGGAAGATTTCATTATGGCAGTGCTTTTGGGGAAAAAAGTGGTCATGCCGACAAGGTTGAAACCATAAGTGAAACTCTTGTGAAACATGGCTTCAACTACAGTGGGAAAGACTTCATCTATTCAGGTATTACAGGTTGCCCACTGCAAGCATATATTTTTATGGGGCCAATATACTACCAGAAATTAAAACATATGGTTCTCGATAAGATGCATGCTCGTGGTAGCGGCCCTCGTACCTTGTTAACTAGACAGCCTACAGAAGGGAGAGCTAGGAATGGAGGTCTACGGGTTGGAGAAATGGAACGTGATAGCTTAATTGCATATGGTGCTAGTATGTTGATTCATGAGCGGCTCATGTTATCTAGTGATCCTTTTGAAGTTCAGGTCTGTAGAGGGTGTGGGTTGTTAGGATATTACCACCACAAGGCAAAAACTGGTTTTTGTTCATATTGTAAGAATGGAGACCAAATTTCTACCCTGAAGATACCATATGCATGCAAACTCTTGATTCAGGAACTCCAATCAATGAATATTGTTCCTCGCTTAAAATTGGAAGAAGCCTAA

Protein:

>Am01G010780.1
MALEGYPPPEPTKEFNKGNAFGDCGMDKQFLTAPVKSAVDKFQLLPEFLKIRGLVKQHLDSFNYFVKTDMKKIVRANDTIRSHKFPHIYLRFLNVRIDKPSIMIDGSSEDITPQKCRLSDQTYAAPIVVDVEYTQGSPDNLRKETKTNVVIGRMPIMLRSCCCVLYEKDEAGLAQDGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDQKRNITASVTSSTEKIKTKTVIVMEKEKMWLQLNQFPKKVPLMIVMKAMGMESDQEIIQMVGRDPRYSSLLLPSFEECRKSGVYTQEQALEYLDSKVKQFMNSNTQSEKERRIISVLRDVFLANVPVHQDNFRGKCIYVAVMMRRIMDAILNKDKMDDKDYVGNKRLELSGQLISLLFEDLFKTMIAEVKKGIDIRLDKPDKASRFDICQLLGREEITNGLERTLSTGNFNVQRFRMERKGMTQVLQRLSFISALGQMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYVLGVEDVEYLSAEELHTPDSFLVIFNGLILGKHRRPQSFATAMRKLRRAGVIGQFVSVYANEKQSCVYLASDGGRVCRPLVIADKGISRVKDHHMKELKDGVIKFDDFLRDGLIEYLDVNEENNALIALYEGDATSETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLSRMDTLLYLLVYPQRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKSTVVNQKYTNGTEDRILRPDRTAPDAERMQILDDDGLAAPGEILRPNDIYINKQSPRDTKTDIRGSAANLPDSAYRTVQQTFKGNGGEVVDRVVLCSDKNSNMCIKFMIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEKSGHADKVETISETLVKHGFNYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRTLLTRQPTEGRARNGGLRVGEMERDSLIAYGASMLIHERLMLSSDPFEVQVCRGCGLLGYYHHKAKTGFCSYCKNGDQISTLKIPYACKLLIQELQSMNIVPRLKLEEA*

Promoter(3k):

>AM01G010780.1
GCTAACCGTGCTTCTTCGCTTTTGCCTTTCCCCGTTTCTCTGTAAAAACCACAATAAATAAAGGGTGAGATAAAAATTATCTCAGTGAGTCCTATCGAGACCCCTTACTAACTCTAGCGGTTCATTATGCTTTCATTCTTGAACTCATAGCCCTAATAAGCGACTATGTGGACATGATTTCTTTGAGCTCGTAGTCCTAATAAGCGACTACGTATTATATTTTTTTATTACTTGTAGCCCTAATAAGCGACTACAGTTCATGTCTTATTCTTTTCTTTAACTTAGCACAACACCTCGAGCCACCTTATTCGGTTATTTCTTTGGCTTTTGGTGAACCCAATTCCGCTGACCTTGGAAAGCGGGCTACATGGAAAGGGCCTAGGGTTCGGGCTCATGACTTCCCTGCCCTAGTATGCTAATAAATCTGGGGTCGTCACCCTTGATATACATATATTATTATATGTACGCCATTCTTCCTCTCCTCAAGGGAAAGTAACTTAACTTGTTTTTACATGAATTGAAAATTACATGCCTTGTAAGGACTTATAGTCCTTTATCTTATCTTGACTTGTGTACACTCGCGTTTACTAATGTACGGTTTTTCCTCACCTTCATAATTCAAGGATCTTATCTCAAGCATACTCAATTTCATGATATTCATGCATTACAATCATTGGGAAACCTTGGGGAAATGATTAGAATGAACTTGGAATCATTTGGAATGGACTAAGGTGCATTTTGAAAATGGGTGACAGAAGCTTACGCACGGTCCGTGTCCTGGAGGCGCACGACTCGTGCGTGTTTTCAAAAATTTTGAAACACAAATGCGTAGGGTACGCACAGTCCGTGCCCTAGGGCGCACGGTCCGTGCCATGTTTTTAAAACCTTTCAGGCCACCTGCGAATAAGAAGCACGGTCCGTGCCACTGGGGCACACGATCCGTGCGTGTTCATCAGTAACCCAAAAATTGTTGTTTTCGTAAATTCTTTCCATCCCGTTTCGATTCCAAGTTTCATTCCGATCGATACCCTAACACAACAAACATTATTCCAGTCTAGAACAGCAATCAATACTTCAATCAATTCAAACAATCACAATGTCAATCAATCAATCGTATAAATTATCGTTAAAACGTAATTTCTTAAAACTGTTTTTGACTCGCTTTTTTCGAAACAAACGTAAAACACATGGACTCAAGGACCTGGAACTCAGTATCGCACAAATATCCCTAAGCGAGTATAGAACTCACCGTATTGTGATGAAAATCACAAACAACTACGACGACAACTTGACTTCAACGAACGAAAACCGAAATCTCACGAACCGGCTCCGTACTCGTCTAACCACTTCCAAAATCGAACCCAGCAGCTCTTATTTCGAATCTAATTTCCTTTGCTACTGAGATTGCTTCCACTATGGCCCAAACTATTTCAATCTACAATTTATGTTCAGAAATGGTGTACTCTTGCTCTATTAGGGACATGCAAAGCTCAAAACTCCATTTTTGTCAAGTGGAGCTTGAAGTGTTCGTCAATGGTGTTTTGTGATGGAGAGAGTTGTTGGTTTCGAAAAGGGTATCAGTAGGAAGAGGAAGGTGAGCCGATCACAATGGTACCAAGAAGTTGGACATGCATCAATATTTGAGAAATGTCTCTCCTCTTCTCCTCCTTCCTTCTCTCTCGAATTCTCCTCTCTCTCAAGCTCTCCCTTTCTCTGTTATTCTGTTTTTGTTTTCAGCACTTGTGTGGGTGTGTGTTATGTTTTTGGGTTTAATGAGGGAGAGTGTCCTTGGTTCAGCTGAGGGCTTCACTTAATGAGGTGGCAATTACCATAATACCCTTATTTCACCAATTTACTCATTAAACCCCGCGTATGGGGTTGTTATTTGAAAGGTGGTTCAGCTGAACTCACTTATGGGGGAAAAAGACGAAAATACCCCTATCCTAGTATTCTCACTTAAAATTTCAATTAGCTCACAAGTACAACGCAATTCGCTTAGTCAATTATGCTAACAATCTATCTTGGCCTCTTGCTAATTTCGATAAATGAAATTAGCTAAATAGGGGATGTTACACAAATCCGTTCCATCCACCAAAACTCAAGCTTTCAAAATCCTAAGTCGACCCATTAACCCCTAGTTTAGTCTATTTAGGCACTATCACATTTTTTTGTTATCCGCTTTTTTTCCCCAAAAATGTTCTAAAACCCTGAAGACCGGAGCAAACCCTAAAACACACGACGGCTCACCACACTCCGCGTCCTTCGTCCTGCACCGTCCTCTACGGCCTACGCTAACTGCTGCGTACGCGACCTGAAGGCTGCGCGTCCTCTACGCTCGCTGCTCCGACCTGCACAGTGCTGCTCCTCATCTCTGTTCGTGCGTGACCCTGAGTCGTGACTCTCTATAAAGGTACTTGCTCCCTGTTCCATGCGTTTCTCTCCTTTATTTTGATTTATTTTTCAAGTATAAATAAAAACAATTCAAAGGGTTCTGTTATTCACGACTCTATGCCCTTATTACTTTTTCTCTTATATTCTATTTCTTTTTGACAAAATCTTATTGTGAGGTGTGGTGCAAAATATTAATTTCGGTGGTGCTATTATTAAAATGATTGGGCTGTTTGATGTGTTGCTGTTTGGGCCTCGCTTATTGTTGTGGGCCGGGTCTCTTCAACAATACAGAAGCTGAGTTTCGTATATCTCTCTGCTTTTGCGTCCTTCTTCAATATAATCTCGCATCCTCAGAAACAGAAACGTAGCGTGAAGCGATACACAGAGTGAGAGAGCAAGGCGCGATACACAGAGAGAGAAGTGAAATCCAGAATCTCGCGTTTCAGTTATTGTAATTCGCTGTCCTTCTTCTCTTCTGTTTTGTTCTTGCATTTCGCCAGACGCCACATTCATCGAAGGGTTTATATTCCCTTAAGCGAGGTTTAAGCTTTTGCGGCTTCATTCAAACGAACAACACGAGAAGAACGTCGCAACTGTTCCATCGTTTTC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00562.31	RNA_pol_Rpb2_6	686	1062	8.30E-123
PF04563.18	RNA_pol_Rpb2_1	53	416	1.70E-50
PF04560.23	RNA_pol_Rpb2_7	1064	1155	5.90E-31
PF04561.17	RNA_pol_Rpb2_2	204	380	4.00E-26
PF04565.19	RNA_pol_Rpb2_3	456	520	1.10E-20
PF04566.16	RNA_pol_Rpb2_4	557	617	1.20E-20
PF04567.20	RNA_pol_Rpb2_5	639	678	4.10E-09

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0003677	DNA binding	Molecular Function
GO:0046872	metal ion binding	Molecular Function
GO:0009561	megagametogenesis	Biological Process

InterPro

InterPro term	Description
IPR007644	RNA polymerase, beta subunit, protrusion
IPR007121	RNA polymerase, beta subunit, conserved site
IPR014724	RNA polymerase Rpb2, OB-fold
IPR007641	RNA polymerase Rpb2, domain 7
IPR007647	RNA polymerase Rpb2, domain 5
IPR007646	RNA polymerase Rpb2, domain 4
IPR007645	RNA polymerase Rpb2, domain 3
IPR007642	RNA polymerase Rpb2, domain 2
IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily
IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR015712	DNA-directed RNA polymerase, subunit 2

trEMBL

trEMBL term	Description
A0A8B8KA05	_

SwissProt

SwissProt term	Description
NRPC2_ARATH	DNA-directed RNA polymerase III subunit 2

KEGG

KO	Description	Enzyme
K03021	DNA-directed RNA polymerase III subunit RPC2	[EC: 2.7.7.6]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G45140	nuclear RNA polymerase C2
Medicago sativa L.	MsG0880042844.01.T01	_
Oryza sativa L.	LOC_Os03g28960.1	DNA-directed RNA polymerase subunit, putative, expressed
Cucumis sativus L.	Csa009948	_
Glycyrrhiza uralensis Fisch.	Glyur002226s00031312.1	_
Codonopsis lanceolata	Cl_chr03_55530T	_
Arachis hypogaea L.	AH13G25030.1	DNA-directed RNA polymerase III subunit 2 like

Expression pattern