| Gene ID | Annotation |
|---|---|
| Am01G010680.1 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am01G010680.1 | mRNA | Chr01 | 47582668 | 47584497 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF12854.10 | PPR_1 | 191 | 223 | 1.40E-93 |
| PF12854.10 | PPR_1 | 225 | 258 | 1.40E-93 |
| PF12854.10 | PPR_1 | 261 | 291 | 1.40E-93 |
| PF12854.10 | PPR_1 | 296 | 326 | 1.40E-93 |
| PF12854.10 | PPR_1 | 328 | 361 | 1.40E-93 |
| PF12854.10 | PPR_1 | 399 | 430 | 1.40E-93 |
| PF13041.9 | PPR_2 | 194 | 236 | 5.40E-92 |
| PF13041.9 | PPR_2 | 229 | 269 | 5.40E-92 |
| PF13041.9 | PPR_2 | 265 | 293 | 5.40E-92 |
| PF13041.9 | PPR_2 | 297 | 337 | 5.40E-92 |
| PF13041.9 | PPR_2 | 332 | 371 | 5.40E-92 |
| PF13041.9 | PPR_2 | 368 | 416 | 5.40E-92 |
| PF13041.9 | PPR_2 | 405 | 451 | 5.40E-92 |
| PF13041.9 | PPR_2 | 473 | 515 | 5.40E-92 |
| PF01535.23 | PPR | 198 | 227 | 1.40E-81 |
| PF01535.23 | PPR | 232 | 262 | 1.40E-81 |
| PF01535.23 | PPR | 267 | 294 | 1.40E-81 |
| PF01535.23 | PPR | 300 | 330 | 1.40E-81 |
| PF01535.23 | PPR | 405 | 435 | 1.40E-81 |
| PF13812.9 | PPR_3 | 184 | 243 | 7.00E-53 |
| PF13812.9 | PPR_3 | 296 | 342 | 7.00E-53 |
| PF13812.9 | PPR_3 | 355 | 407 | 7.00E-53 |
| PF13812.9 | PPR_3 | 392 | 450 | 7.00E-53 |
| PF17177.7 | PPR_long | 137 | 282 | 3.80E-32 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT1 |
| GO term | Description | Category |
|---|---|---|
| GO:0003729 | mRNA binding | Molecular Function |
| GO:0010019 | chloroplast-nucleus signaling pathway | Biological Process |
| GO:0009507 | chloroplast | Cellular Component |
| GO:0031930 | mitochondria-nucleus signaling pathway | Biological Process |
| GO:0004519 | endonuclease activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR002885 | Pentatricopeptide repeat |
| IPR033443 | Pentacotripeptide-repeat region of PRORP |
| trEMBL term | Description |
|---|---|
| A0A1S3EEH5 | _ |
| SwissProt term | Description |
|---|---|
| PP404_ARATH | Pentatricopeptide repeat-containing protein At5g38730 |
| KO | Description | Enzyme |
|---|---|---|
| K17710 | pentatricopeptide repeat domain-containing protein 1 |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G38730 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Medicago sativa L. | MsG0880043667.01.T01 | _ |
| Oryza sativa L. | LOC_Os02g58139.1 | OsSigP1 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed |
| Cucumis sativus L. | Csa008260 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000057s00008977.1 | _ |
| Codonopsis lanceolata | Cl_chr03_36830T | _ |
| Arachis hypogaea L. | AH02G20210.1 | Pentatricopeptide repeat-containing protein At5g38730 like |