Gene detail

Detail information of Am01G010660.1 Annotation

Gene ID	Annotation
Am01G010660.1	retinoblastoma-related 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G010660.1	mRNA	Chr01	47499937	47507646	-

Sequences

CDS:

>Am01G010660.1
ATGAGTCCTCAAGCTGATTCGGACATGGAAGATGTTAAGCCATTGGTTTCATCGGTTGATAATGGAGACCAAGCTGAAGCTAGGTTCGCTGAGTTCTGCAAGAATGGGTTAGCTGTGGATGAGAACAGCTGTAAAGAAGCAATGGATCTATTTGGAAGAACAAAACATCTTCTACCGACAAATGTTTCTTCAATGGGGAGTGGAACGTCTGAAGAAGCAGAGCGGTACTGGTTTGCTGTTATTTTGTACTCTGTCAAGAGATTGACTCAGAAAAATGAGGAAACTGGGAAGGAAGAGACTGAGAACACCAGGCTTACCCTGTGTCGAATATTGAGAGCAGCTAAGCTTAACATTACAGATTTTTTTAAAGAACTTCCTCAGTTTGTTGTTAAGGCTGGTCCAATTTTAAGCAATTTATATGGTGCTGATTGGGAAAGCAGGCTTGAGGCGAAGGAGATGCATGCCAATGCTATCCACTTGAAAACTCTTAGCAAGTTTTATAAACGTGTATTTGGAGATTATTTTGTGGCAACTGATGCAAATGTTGAAAAGAACTCATCTGTTACTGTTCATGCATCTGAATACCATCGATTTGGATGGTTACTTTTCTTGGCGCTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTGGTGACTTGCACCACTGGTTTAATTTCTATATTGGCTATCTTAATTATTCACGTTCCTGCTCGTTTTCGGAATTTCAACATTCACGACTCCTCACCTTTTGTTAAGAAAAGTAGCAAAGGTGTAGACCTCCTTGCTTCACTTTGCAACATATATAACACTTCAGAAGATGAGATGAGGAAAACCATGGAGAAAGCCAATAATTTGATAGCGGACATATTGAAGAAGAAACCCTGTTTGGCATCTGAATGCGATACTGAGAACTTAGAGAATTTTGATAGAGATGGTTTAACCTATTTTAACGATCTGATGGAAGAATCATCTCTGCCATCTAGTTTGAATATCTTAGAAAATGATTATGACCACATGATTTGCAACAAGGGTGAATTTGATGAAAGGATATTCATTAATGAGGACGACAGCCTGCTAGCTTCAGGAAATTTGTCTGGAAGTTCTGTTTCAGCAGGTTTAAAGAGAAAGTTTGATTCAATGGCATCACCTGCTAAGACCATGACAAGTCCACTTTCGCCCCATCGGTCCCCTGCATCCCATGCTAATGGTATTCCTAGTAGTGCAAATTCAAAGATCGCTGCTACACCTGTTAGCACAGCTATGACTACTGCAAAGTGGCTTCGTACTGTCATTTCTCCACTTCCATCAAAGCCGTCACTAGAGCTAGAGCGATTCTTGACATCATGTGATAGGGATGTTACAAGCGATGTGGTGCGCAGAGCGCAGATTATATTGCAGGCTATATTTCCTAGTAGTCCCCTTGGGGAGCGATGTGTAACTGGAAGCCTGCAAAGTGCTAACCTCATGGACAATATATGGGCAGAACAGCGAAGGTTAGAAGCACTGAAGTTATACTACAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCTCAGATGCTTCACGCAACTAATTTAACCTCGCTGCTAACTAATGAGAGGTTCCATAGGTGTATGCTTGCATGTTCTGCAGAATTAGTCTTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTGGAGAGGACTGGAATTACAGCTTTTGATCTTAGCAAGGTGATCGAAAGTTTTATTAGACATGAAGAGTCTCTCCCAAGAGAATTAAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGCATGGTATGGGAGAAAGGTTCCTCAATGTATAATTCTTTGGCGGTTGCTAGACCTGCCCTTTCTGCAGAAATCAATCGGCTTGGGCTGTTAGCTGAACCGATGCCATCATTGGATGAAATCGCAATGCATATTAACTTCTCTTGTGGAGGGCTGCCTCCTGTGCCTTCCTTGCCTAAGCCTGAGCCTTTGTCAACTCAAAATGGAGATACCAGATCACCAAAGCGACTTTGTACAGAGTATCGAAATGTGTTAGTGGAACGGAATTCTTTTACTTCACCCGTGAAAGATCGACTTCTTCCCTTCAGTAACCTAAAGTCAAAGCTAGCCCCACCTCCTTTGCAGTCGGCATTTGCTAGTCCAACAAAGCCAAATCCAGGAGGTGGAGGAGAAACATGTGCAGAAACTGGGATAAGCATATTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATAAGCGGAATGGTTGAAAGGCTACAAGTATCTCAGCAGATAAGGGAGAATGTTTACTCGCTTTTCCAGCGAATCCTAAACCAATGGACATCTCTCTTCTTCAACCGTCATATTGACCAAATCATTTTGTGTTGCTTCTATGGTGTTTCAAAGATTTCACAACTGAACCTAACTTTTAGGGAGATTATATACAACTATAGAAAGCAACCACACTGCAAACCACAAGTTTTTCGTAGTGTATTTATTGACTGGTCGGCACGCCGTAATGGAGCATCTAAACAAAGAACGGGACAGGAACATGTCGATATTATTTCATTTTACAATGAAATATTCATTCCCTCTGTAAAGCCACTACTCGTTGAACTTGGCCCTGGTGGAGCGACTATGAAAAGTGATCGAATACCTGAAGCTAACAATAAAAATGATGGCCATTTAGCTCCTGGGTCTCCTAAAGTACCTTTCCCAAGCCTTCCTGATATGTCACCAAAAAAAGTGTCTGCCACACACAACGTATATGTGTCTCCGTTACGATCATCTAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCATGTGTTGGTGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTAACTGCCATCAACAACCGTTTAAATGGCAACCGGAAGGTACGAGCCCTCAATTTCGATGAACCCGATGAGGGATTAGTTAGTGACTCTATGGTTGCGAACAGCCTCTATCTGCAGAATGGAAGTTGCGCGTCATCATCGGGCGTGCCATTGAAGACTGAGCAACCTGACGCTTGA

Protein:

>Am01G010660.1
MSPQADSDMEDVKPLVSSVDNGDQAEARFAEFCKNGLAVDENSCKEAMDLFGRTKHLLPTNVSSMGSGTSEEAERYWFAVILYSVKRLTQKNEETGKEETENTRLTLCRILRAAKLNITDFFKELPQFVVKAGPILSNLYGADWESRLEAKEMHANAIHLKTLSKFYKRVFGDYFVATDANVEKNSSVTVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTTGLISILAILIIHVPARFRNFNIHDSSPFVKKSSKGVDLLASLCNIYNTSEDEMRKTMEKANNLIADILKKKPCLASECDTENLENFDRDGLTYFNDLMEESSLPSSLNILENDYDHMICNKGEFDERIFINEDDSLLASGNLSGSSVSAGLKRKFDSMASPAKTMTSPLSPHRSPASHANGIPSSANSKIAATPVSTAMTTAKWLRTVISPLPSKPSLELERFLTSCDRDVTSDVVRRAQIILQAIFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQMLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPSLPKPEPLSTQNGDTRSPKRLCTEYRNVLVERNSFTSPVKDRLLPFSNLKSKLAPPPLQSAFASPTKPNPGGGGETCAETGISIFFGKIIKLGAVRISGMVERLQVSQQIRENVYSLFQRILNQWTSLFFNRHIDQIILCCFYGVSKISQLNLTFREIIYNYRKQPHCKPQVFRSVFIDWSARRNGASKQRTGQEHVDIISFYNEIFIPSVKPLLVELGPGGATMKSDRIPEANNKNDGHLAPGSPKVPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRALNFDEPDEGLVSDSMVANSLYLQNGSCASSSGVPLKTEQPDA*

Promoter(3k):

>AM01G010660.1
CTCACATCCAATCTTTAGAGCAATCAGTTTCCCTTCAACTTCAAATTATTAAGGTTTTAATTATGAATATATTTGTATTCTTTAATTATATAGATTCATTTGTTTTTGACAGGGTGATTCTCCAATAAGCTTGGTGCTGAATAGATATGATAATGTCACATGGTGAGTGCTGAATGAAGGAGACGAATGAGATTAGTCGACTTTATTTTCAACAGTCAAGGCTCCACGGACCAGAGACAGATCTCTCCCATCTGTAAATACTGATATCAGTCCATACTTTTGTAGATGGTTAGGGAAATGGTGAAGTCAAACTGTGGGTATCATACTATCATTATATCACCACAGTGCCTTCAATGTTTTACTTAATTATTTAGCCCATGTTTTGATTCTGCATCTTTGGTAGTTTGAATATTTGCTGTACTGGAAGTTTCTTTTGTGATTTGAACAGTTGCCTTTAGCATGTCTATGAATGATATAGTAGTTGTGTCTATTTAATTTTTTTTAACATCTGTATGCTTGCTTACTTATATTTTCAGTTATGACAGAGCTTGTATTTAATATATATGTTGGGTGAACCCTTTTCTTTGGTATTTCAAGTATAATGGGAATTTTCTTTGGATTTAGTGTATATGTTGTGTGAATCACTTTATGTTGGGGCTTGTATCAGGTGCAATTTTTTTTTTTAAAAAAAAAACTTAAATTAGCGTGGGCCTAGCCGACGCTAAATGTTGGAGTTGACATTTTTTTGTTGACTTTAGCGTCGGCCAGGCCGACGCTAGATGATTCGTTGACTTTTTTTTTATTGACTAAGTAGCGTCGGCCAGGCCCACGCTAAAGTTAGCGTCGGCTAAATTAACGGGACGCTACAATTACCTTCGAACATTTTAGCGTCGACACGTGGCCGACGCTAACCCGACGCTAATTCACAATTAGCGTCCGCTTTTGGCCTATTAGCGTGGGCTTTTGGCCGACGCTAAAAACTGTTTTTCTAGTAGTGATGTTTGGGAGTTTTGGAGGGAGAGTTTGGATAAACGGGAGGAAGAGGCAAGAAGGAGGAATGATAGTCCCCCACCTAGAATGAAAAACTTTTTTATTTTTTGATAAACAAATGTTAGTGGGGGTGGGAGAATGTTAGTTTCCGGGGTTTGAATCCTAGACCTCATTCTTGCAACTCCTTCATGTCTCTTAGCTCGCCAACTGAACTATCTCCCTCGGAATAGAATGAAAAACTTGATTTTCTTCACAATTCTAAAATCCTCCAAAATGGGGGAACTCAAAAAATGTATTGGAGTGAGGTTTTGGAGGGTTTGGGAAGACTTTGAAAAATCTTCAAATCTTTCCATCTTGTTATAATACTTTCAAAATTAAAAATATTTTGGTCATAAGCATTTTTTTCACTGCTCTACGAATATACTCTTTCAAAGTGAAATCTCTCTTCTTTAAATGAGTGTGGGAAGAACATATCAAAGAGTTATACTTATATGAACAAAATGTAATTTCTAAAAATATAATTTCTAACTAGTGACTAGAGAAGCATATTTACAATAACAAAAAGTTATATAATACCAATACGAGGTAAATAACTTTTGTTATCCATTAAAAATATATTATATCTTTTTTAGTGTAGATCTTTCCAAGTACTTGTGAGACAAGTTATGAGAGAGAATGACACAAAAAATAATGACATTTATTATATTTATTATTATATCGTATGTGTCAATCTCTTTTATAACTTGTAGATCTAAACTCAATTTTTTTGGTGCACCCATGAACTATACCTTTTGCAACCCACCTTATACGTTTCCATATTTATTACTACCTGTTGGAAAAAAAAATATTAAGTTTAAAATTGGAAACATATTGAAATTATATCTATATTTAAACTACTTTAGATTAGATTGGACCGGAAAGACATTGGATTTAAAACCAAATCAATTAGATAATAAAGTAATAAATACGATGAAATAAAAAAGGATAATTTTTTCCCTCAATGCAATTCAATGTAATCCTCTAATATCTTTACTTATTATTTTTTTTGACAAAATTAAGCAACATCCTCATTTATGATAAGTTTATTTAACATAAATAAAAATGCTATTTATCACGACATATTCTCTTTTAGAATTTCACGAAACCACTTGTATTCTTTTAATTGGCTTGACTTCGCTGGCAATTGATCAATATATAGTTTTGCGACCAATCCATTGAATAGTTAGGGTTTCGCGATCCCTCGTATTTAATAAATTCGGGTGAAATAATATTACTCTTCAATAGAAAATGTGTCATAAATATTTGTATTCGTAACTCATCAATAAATCAAAGAATTCAAACCCACAATGAACCTCTTTTATTAAAAATTAAAATAAATAAATTAAAGTTTTAACAAATCATGGATTTAAATCAAATACTAGACTTTTATAAAAAAAAAAAAGAAATCATATGCTAGATCCTACTTCAACAAATTTGTAAAACAACAAATAGTACATATACATTATTTAATTATTTAATTTAAGAAAGCAAAGAAAAATGAGAAATGCCGAAAAAAAAAGATCAGAATATAAATCAAATGCACTAGTTGATTGTTGTCAAAAAAAAAAAGCCATGCCCAAATCGGGAATTTCGTATCAAACTAATGGAAATCTCAAAAGTACCCTCGCACACATCAGAAGACAACGTTTTGGCGGGAAAATCATGTAGGGTATAGCAAGTGGCGCCAAAACACAATCAACTCTTTATTTTTTAATAAAAAATAAATAAATATTATATAATAAAAAGCCGAAAAAATCGGTAACATACAAAACAGACAACAGAACAACGCAAAGCAACGACACGTTTCGAGGTTTTCAGTGTTGTTACCGTTCTTCTTTTCCTCCTCCTCCTCAATTGGGCTAGGGTTTCCTCAATTTTTCCAAGCTATCACAGTTTCTCATAGCAATTCGTCGACTTTCCGCGCGAAATCTTGTTCCTTTTCGCGCGATCTGTGTTAATTAGGGTTCTTAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01858.20	RB_A	415	616	2.30E-65
PF01857.23	RB_B	740	870	7.20E-42
PF11934.11	DUF3452	99	234	1.60E-30

Gene family

Gene family	Subfamily
Transcription Factors Family	RB

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0016020	membrane	Cellular Component
GO:0030154	cell differentiation	Biological Process
GO:0048523	negative regulation of cellular process	Biological Process

InterPro

InterPro term	Description
IPR024599	Retinoblastoma-associated protein, N-terminal
IPR002719	Retinoblastoma-associated protein, B-box
IPR002720	Retinoblastoma-associated protein, A-box
IPR028309	Retinoblastoma protein family
IPR036915	Cyclin-like superfamily

trEMBL

trEMBL term	Description
A0AAN9KDI3	_

SwissProt

SwissProt term	Description
RBR1_PEA	Retinoblastoma-related protein 1

KEGG

KO	Description	Enzyme
K04681	retinoblastoma-like protein 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G12280	retinoblastoma-related 1
Medicago sativa L.	MsG0880043758.01.T01	_
Oryza sativa L.	LOC_Os08g42600.1	retinoblastoma-related protein-like, putative, expressed
Cucumis sativus L.	Csa010818	_
Glycyrrhiza uralensis Fisch.	Glyur000559s00020525.2	_
Codonopsis lanceolata	Cl_chr01_53650T	_
Arachis hypogaea L.	AH16G36910.1	Retinoblastoma-related protein 1 like

Expression pattern