Gene detail

Detail information of Am01G010320.1 Annotation

Gene ID	Annotation
Am01G010320.1	nuclear RNA polymerase D1B

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G010320.1	mRNA	Chr01	44360126	44389674	+

Sequences

CDS:

>Am01G010320.1
ATGATGGAAGATAATCCTCCTTCAATTGTTTTAGATGGGAAGGTTGTTGGGATCAAATTTAGCATGGCTACATGCCCGGAAATTTGCACTGCTTCAATCAGTGACTCATCAATCAGCCACGCCAGTCAGCTGTCAAATCCATTCCTTGGATTACCACTTGAATTTGGAAGATGTGAATCTTGTGGTACTTCTGAAGCAGGAAAATGCGAAGGTCATTTTGGGTACATTGAACTTCCGGTTCCAATATATCATCCGAGTCATGTTAGTGAGTTGAAGCGAATACTGAGCCTAGTCTGCTTGAGTTGCTTAAAAATGAAGAAAACTAAGTTTCCTTCTTCAAGCAGTGGTTTGGCGCAGAGAATAATATCTCCCTGTTGTGAGGAAGCCAGTGCTGCACAAGTTTCGATTCGGGAGGTTAAAACAGCTGATGGAGCTTCTTACTTGGCATTAAAGGTGCCCAAGTCAAAGATGCACGAAGGTTTTTGGAATTTTTTAGACAAATATGGCTATCACTATGACGGTGATCATACTCGAGCTTTGCTTCCTTGCGAGGTGATGGAAATTATCAAGAGAATTCCACTGGAGACGAAAAGAAAACTTGCTGGAAAAGGATATTTTCCTCAAGATGGATATGTCCTGAAGTATCTTCCGGTACCACCAAACTGCTTGTCTGTTCCAGTAGTTTCGGATGGAGTTAGTGTGATGTCATCGGATCCTTCCATCACAATTCTCAGAAAATTGCTTAGGAAGGTTGAAATAATCAAAAGTTCTAGATCGGGTGAACCAAACTTTGAGTCTCATCAAGTGGAAGCTAATGATTTGCAGTCTGTCTTTGATCAGTATCTTCAAGTTCGGGGTACTGCTAAGGCTGCACGCGATATAGAAACACGTTTTGGGGTCAACAAAGAGTTGAACGAGTCCTCAACTAAAGCGTGGCTAGAGAAAATGAGAACCCTCTTTATAAGAAAGGGTTCTGGGTTTTCCTCTAGAAGTGTAATAACTGGAGATGGATATAGAAGGATAAATGAAGTAGGAATTCCGCTGGAAGTTGCCCAGCGGATTACGTTTGAGGAGAGGGTCAGCATTCACAATATTAGTTATTTGCAAAAGTTAGTTGATGAGAATTTGTGTCTGACTTACACAGAAGGTGCATCAACATATTCACTAAGGGAGGGCTCAAAGGGTCACACATATCTCAAGCTTGGGCAGATAGTGCATCGAAGGATTATGGACGGTGATATTGTCTTCATCAATAGACCCCCTACAACACACAAACACTCATTGCAGGCACTGGTTGTGTACATCCATAATGACCACACTGTCAAAATTAATCCTGTAATCTGTGGGCCCCTTGGAGCTGATTTTGATGGTGACTGCGTGCATCTTTTTTATCCGCAGTCACCTGCTGCCAAAGCTGAGGTTGTAGAGTTATTCTCTGTTGAGAAACAACTCCTCAGCTCTCATAGTGGCAACCTAAACCTTCAGTTGACCACAGACTCTATGTTGTCACTCAAGATGTTATTTAAGAAGGGTTTTCTGGATCGAGCAGCAGCAAATCAAATGGCAATGTTTCTTTCGCTGCCTTTGCCACATCCTGCTGTGGTCAGGGCCGCTTTTGGTGATTGTTATTGGACATCTATCCAAATTTTGCAGTGTGCTTTGCCTCTGTGTTTTGATTGTACTGCAGGACGTTACTTAATTAAGCAGAGTGAAATCTTAGAATTTGATATTATTAGAGATGCACTACCTGCAGTTGTAAATGAAATAGCTGCCACAATTTTTTTTGGGAAGGGTCCTCAGGAGGCACTATATTTCTTTGATGTAATACAGCCCTTTTTGATGGAGAGCTTATTTGCCAATGGATTTAGTGTTGGATTACAAGAGTTTTCAATATCGAAGGCAGTGAAAAATATTATAAATAAAAACATTGGGAAAGTTTCTCCATTGTTAGGTCAGATGAGGTCCCTATATAAGGAATTGGTGGCACAGAAATTGGAGAAGGAACTTCAAGATATTGAACTCCCTGTCATAAATTTTGCTTTTAAATCAACCAAACTTGGAGATTTGATTGACTCAAAGAGTAAGTCGGCTGTTGACAAGGTGGTTCAACAGATTGGATTTTTAGGCCAACAACTTTTTGAGAGAGGAAGGTTCTATTCAAAGGGATTGGCTGAGGATGTAGCAAGACATTTTCATGTGAAATGTTTTTATGGTGATGATGGTTATCCCTCTGCTGAGTATGGATTACTCAAAGGCTGCTTTTTTCATGGTTTGGATCCATACGAAGCATTGGTGCATTCAATTTCAACTAGAGAAATAATTGTGCGCTCTTCAAGAGGATTATCCGAACCAGGAACTCTTTTTAAGAACTTGATGGCCATTCTACGTGACATTGTCATTAGTTATGATGGCACTGTCAGGAATGTTTGCAGTAACTCAGTTATACAGTTTGAGTATGGGATCCAACCTGGGGACAAAGCTCAGGTGTTATTCCCTGCGGGTGAGCCTGTTGGTGTCTTAGCTGCAACTTCCATGTCAAATCCTGCTTATAAAGCAGTCCTGGATTCCAGTCCGAGCAGCAATTCTTCATGGGAGTTGATGAAGGAAATACTACTTTGCAAGATCAATTTTAGGAATGAACCAATTGATCGGCGAGTAGTATTGTACTTGAATGACTGTGACTGCGGAAAAAGTTATTGTCGCGAAAAGGCAGCATATGTGCTTAAAAATCAATTGAGAAAAATAAGCCTCAAGGATGCAGCAGTAGATTTCGTTGTGGAATACCAACAACAGCGAAAACGCAAGGAAGGTTCTGAAACTGATGCAGGCCTTGTTGGTCATATTCATCTGGAAGAGGTGATGTTAGAGGAGCTGAAAATCAATATGACTGAAGTTTTCCAAAGATGTCAACAAAGACTTAATTCCTTTAATCGGAAGAAGAAATTGTACCAAGTTTTTAGAAGAACTGAATTGTTTTTCAGTGAGTCTTGCTCTTCCCCTAATTATTCTGCCCCTTGTGTAACGTTCCTTTGGCCGGATGGTAATGTTAACGATTTAGACCAAACCATAAAAGTCCTTGCGGACATGATCTGCCCGGTTCTATTAGATACAATAATCCAAGGAGACCCTCGCATCAGCTCTGCAAATATAATCTGGGTTAATCCAGACTCAAACACATGGGTTCGCAACCCTTCCAAAACTGCTAATGGTGAATTGGCATTGGACATCATTCTTGAGAAGGATGCTGTTAAACAAAGTGGTGATGCATGGAGGATTGTGCTTGACTCCTGTCTCCCTGTTCTGCATTTAATTGATACTAGGCGTTCTATCCCCTATGCTATTAAACAAGTTCAAGAGTTACTGGGGATATCATGTACTTTTGATCAAGCAATTCAGCGCCTTGCTTCGTCTGTTAAAATGGTTGCAAAAGGTGTTCTGAGAGAGCATCTAATTTTGTTAGCAAGTAGTATGACTTGTGGTGGGAATTTAGTGGGATTCAACACCGGTGGCTATAAAGCACTATCTCGTCAATTAAACATTCAAGTACCATTCACTGATGCAACACTCTTTACTCCAAGAAAATGCTTTGAGAAAGCTGCTGAGAAATGTCATGCAGACACTTTATCAAGCATCGTTGCCTCCTGTTCCTGGGGTAAACATGTGGCGGTTGGTACAGGATCAAGGTTTGATATTGTGTGGGATCCAAAGGAGGAGATAAAATCAAAGGAGATTGAAGGGATGGATGTTTACATGTTTCTTAACATGGTCAAAAACCTATCCAATGGGGAAGAAGAAAACAATGCTTGTTTGGGTGAGGACATTGATGATTTGCTGGAAGATGAAAATGAGGAATGGGGCATGTCCCCACAGCACACCTCTGGATTCGATGCTGTCTTTGATGAGAATTTTGAACTACTGAACGGCTCAACATCTAATGGTTGGGGTTCAAATACAGATCAAATCAATCAGCCCAAAACAAATACGAATGATTGGTCTGGTTGGGGACAAAATAAATCTGAAAAACAAGTTGTTGTGGCTGAAGAGGACCAATGGGAGTCTGGGAGCTCTCAGAAGCATAAAGCTGATGTTATCCAAAAAGACTCTTCCATGTCTGGTGCATGGGAGTCTGGGAGCAATCAAGCGTGGAAGTCTGATGTTATCCAAGAAGACTCGTCGAAGACAGATCAAAATAATGATTGGGGAATAGATAAATCTGAAAGACCCAAAGAAGATTCTCGTAGCTCCGGTAAATGGAAAGCCGATCCTATACAAACTACAGATCAAGGGAAAACAAATTCAAGTGGTTGGGATGCTTGGGGAAAAAATAAACTTGAAATACATGAGGGTGAGTCTCAAATTGTACAAGAAGATTCTTGGAACTCTCAAAAATCGAAAGCTGAATACAATGGAGCTGATGTTTCCCAAGAAGACCCTCCCAAGTCAAGTGCTTGGGGCGCAATCAAAGATACAACAAAACCCAAGTCAAATGATTGGTCCTCTTGGGGAAAGAAAAAAGAGGAAATACAAGATGGGTCTAAAAAAGTACAAGAGGATTCTTGGAACTCTCAGAAATGGAAAGCTGAATCTAAAGCTGGAACCGATATTATCCAAGAAGACTCTCCCAAGACAGGTGCTTGGGGTGCAATCACAGATACCGCAAAACCCAAGTCAAATGATTGGTCCTCTTGGGGAAAGAAAAAAGAGGAAATACAAGATGGGTCTAAAAAAGTACAAGAGGATTCTTGGAACTCTCAGAAATGGAATGCCCAATCTAAGGCTGGAGCTGATGTTACTCAAGAAGACTCTCCCAAGTCAATTGCTTGGGGTGCAGTCAAAGATTCAACAACACCCAAGGCAAATGACTGGTCGTCTTGGGGAAAGAAAAAAGAGGATATACAAGATGGGTCTAAAAAAGGACAAGAGGGTACTTGGAACTCTCAGAAAAGCAAAGCCGAGTCTATGGCTGGAGCTGATGTTACCCAAGCAGACTCTCCCAAATCAAGTGCTTGGGGTGCAGTCAAAGATTCAGCAAAATCCAAGATAGATGACTGGTCCTCTTGGGGAAGGAAAAAAGAGGAAATACAAGGTGGGTCTAAAAAAGTACAAGAGGATTCTTGGAACTCTCAGAAATGGAAAGCCGAATCTATGGATGGGGCTGATGTTACCCAAGAAGACTCTCCCAAAGCGAGTGCGTGGGGTGCAGTCAAAGATTCCACAACACCCAAGACAAATGACTGGTCCTCACGGGGAAAGAAAAAAGAGGAAAGACAAGATGGTGGGTCAGAAAAAATCCAAGATGATTCTTGGAGTTCTGGTAAAAAGTCTGACAATGTAAAGGCGAGTTGGGGTGCCAAAGGGCCGGTTGACAATTCCTCTTGGGGAAAACCCAAATCGCCTGAAAACCAAACTCAGGACTCCCAGAACGACTCAACTCAAGCTGCAGGTTCGCGTGGATGGGACTCACAAATTTCTTCTGCTAATTCTGACAGTGACAGAAATTATCAGTGGGGAAAACAAGGAAGAGACTCATTTAAGAAAAATCGCTTTGAAGGTTCCCAAGGTTGGGGCTCAAATGCTGGCGATGGTAGAAGAAATCGCCCTATGAGACCACCTGGACCCAGGTTGGATTTATACTCTCCCGAGGAGCAGGATATTCGCAAGGAGATTGAACCTATTGTGCAGTCGATCAGAAGAATAATGCAAATGGAAGGGTACAATGATGGGGATCCACTACCTGCTGATGATCAGCTCTTTGTACTCGAAAATGTCTTTGAACATCATCCAGATAAAGAAACGAAAATGGGTGCTGGAATTGATCATGTCATGGTTAACAGACACAGCAGTTTTCAGGAAAGCAGATGCTTGTATGTGGTTTTGAAGGATGGTACTAAAGAAGACTTCTCGTACCGCAAGTGCCTGGAAAACTTAGTAAGGAAGAAATATCCAGACCTTGCTGAGTCATTCAACGGAAAATATTTTAGGAAACCCAGTGGAAGGAGGGATCAGACCCCTAATCCTGCTGGGGAACAGACTCCAACTCAAGCAGGGGAGCAGACCCCAACTACTGCTGGGGAACAGACTCCAACTCCAGCGGGGGATCAGACCTCAACTCCTAATGGCCGATGTAGTATTGAGTCAGAAACATCGAAATACTGGAACAAAACTTCATCTTCTCCTACAAGACCTATTTTTGAGCCCCACTGTGCAACACCGCAATGCCCTATGCTGCCAACATTGCGCCTTGCGTCACCGCAGTCGCGCCCAGCGTTTTGTTTGCGTTATGCGGTGAAGTTTCACCAAATCTTTGTTTCATTTGGTCCTGCAATTGAAATTGAGTCAGACACTGCCGTCCACCTACACCGCCCTGTTTAA

Protein:

>Am01G010320.1
MMEDNPPSIVLDGKVVGIKFSMATCPEICTASISDSSISHASQLSNPFLGLPLEFGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKRILSLVCLSCLKMKKTKFPSSSSGLAQRIISPCCEEASAAQVSIREVKTADGASYLALKVPKSKMHEGFWNFLDKYGYHYDGDHTRALLPCEVMEIIKRIPLETKRKLAGKGYFPQDGYVLKYLPVPPNCLSVPVVSDGVSVMSSDPSITILRKLLRKVEIIKSSRSGEPNFESHQVEANDLQSVFDQYLQVRGTAKAARDIETRFGVNKELNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDGYRRINEVGIPLEVAQRITFEERVSIHNISYLQKLVDENLCLTYTEGASTYSLREGSKGHTYLKLGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHNDHTVKINPVICGPLGADFDGDCVHLFYPQSPAAKAEVVELFSVEKQLLSSHSGNLNLQLTTDSMLSLKMLFKKGFLDRAAANQMAMFLSLPLPHPAVVRAAFGDCYWTSIQILQCALPLCFDCTAGRYLIKQSEILEFDIIRDALPAVVNEIAATIFFGKGPQEALYFFDVIQPFLMESLFANGFSVGLQEFSISKAVKNIINKNIGKVSPLLGQMRSLYKELVAQKLEKELQDIELPVINFAFKSTKLGDLIDSKSKSAVDKVVQQIGFLGQQLFERGRFYSKGLAEDVARHFHVKCFYGDDGYPSAEYGLLKGCFFHGLDPYEALVHSISTREIIVRSSRGLSEPGTLFKNLMAILRDIVISYDGTVRNVCSNSVIQFEYGIQPGDKAQVLFPAGEPVGVLAATSMSNPAYKAVLDSSPSSNSSWELMKEILLCKINFRNEPIDRRVVLYLNDCDCGKSYCREKAAYVLKNQLRKISLKDAAVDFVVEYQQQRKRKEGSETDAGLVGHIHLEEVMLEELKINMTEVFQRCQQRLNSFNRKKKLYQVFRRTELFFSESCSSPNYSAPCVTFLWPDGNVNDLDQTIKVLADMICPVLLDTIIQGDPRISSANIIWVNPDSNTWVRNPSKTANGELALDIILEKDAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLASSVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTPRKCFEKAAEKCHADTLSSIVASCSWGKHVAVGTGSRFDIVWDPKEEIKSKEIEGMDVYMFLNMVKNLSNGEEENNACLGEDIDDLLEDENEEWGMSPQHTSGFDAVFDENFELLNGSTSNGWGSNTDQINQPKTNTNDWSGWGQNKSEKQVVVAEEDQWESGSSQKHKADVIQKDSSMSGAWESGSNQAWKSDVIQEDSSKTDQNNDWGIDKSERPKEDSRSSGKWKADPIQTTDQGKTNSSGWDAWGKNKLEIHEGESQIVQEDSWNSQKSKAEYNGADVSQEDPPKSSAWGAIKDTTKPKSNDWSSWGKKKEEIQDGSKKVQEDSWNSQKWKAESKAGTDIIQEDSPKTGAWGAITDTAKPKSNDWSSWGKKKEEIQDGSKKVQEDSWNSQKWNAQSKAGADVTQEDSPKSIAWGAVKDSTTPKANDWSSWGKKKEDIQDGSKKGQEGTWNSQKSKAESMAGADVTQADSPKSSAWGAVKDSAKSKIDDWSSWGRKKEEIQGGSKKVQEDSWNSQKWKAESMDGADVTQEDSPKASAWGAVKDSTTPKTNDWSSRGKKKEERQDGGSEKIQDDSWSSGKKSDNVKASWGAKGPVDNSSWGKPKSPENQTQDSQNDSTQAAGSRGWDSQISSANSDSDRNYQWGKQGRDSFKKNRFEGSQGWGSNAGDGRRNRPMRPPGPRLDLYSPEEQDIRKEIEPIVQSIRRIMQMEGYNDGDPLPADDQLFVLENVFEHHPDKETKMGAGIDHVMVNRHSSFQESRCLYVVLKDGTKEDFSYRKCLENLVRKKYPDLAESFNGKYFRKPSGRRDQTPNPAGEQTPTQAGEQTPTTAGEQTPTPAGDQTSTPNGRCSIESETSKYWNKTSSSPTRPIFEPHCATPQCPMLPTLRLASPQSRPAFCLRYAVKFHQIFVSFGPAIEIESDTAVHLHRPV*

Promoter(3k):

>AM01G010320.1
TTTTGAATCTGGTGGTCAAGTTTGAAAAAGGTGGACCATAAAGGGCAAAATATTGTTTAGTTGGCGAAAAATGATTGGAGGGCAATTCGGTAATTTTGTTAGTAGGTTAACTAGTACTATACCCGTGCATCCGCATGGGCCGATCGCGTTACGTCATACGATTACCTCAAATAGAAACGTTAGTTTGAAATCTCATTAATCTAAAATCAATCTACTATCTACTATCTACTATAGATTTATACAAATTCACCAAATATGATTTTACCAATACTCCCATTCTATCTAAAAGACACCTCAAATTTTTGAGGGTAAAAATGTCATTACACTCTATTTCTTCTTTTTTTTTTCTCTTTATTCTTACACTCTCTTTCTTACTTTTCACTTTTCTCTTACACTCTCTTTCTTCCTTTTTTCTCTTTCTTCTTACACTCTCTTTCCTCATTTTCACTTTTCTTTTACACTCCCTTTCTTCCTTTTTTTTCTTTTTACTTTACTTTTTCCATAAATAATTATTCTCTTTCTCTTATCACTTCACTTTAATTATTTTAACTAATTTCTAAATTTATACAAACACTACTTTAATTAAAAAATTTGAAGACTACTACTATAAACCTACTATCTAAAAAACAAGAAGCCTTAATGACTATTTAATGGTAAATATAAATATAAATAATCTACTATTTATATTTATATTAATGGTAAATATAAATAGTCATTAAGTCTTCTTGTTTTTTAGATAGTAGGTTTATAGTAGTAGTCTTCAAAATTTTTAATTAAAGTAGTGTTCGCATAAGTTTAGAAATTAGTTAAAAGAATTAAAGTGAAGTGATAAGAGAAAGATAATAATTATTTATGGGAAAAGTAAAGTAAAAAGAAAAAAAAGGAAGAAAAAGAGTGTAAAAGAAAAGTGAAAATGAGGAAAGAGAGTGTAAGAAGAAAGAGAAAAAAGGAAGAAAGAGAGTGTAAGAGAAAAGTGAGAAGTAAGAAAGAGAGTGTAAGAATAAAGAGAAAAAAAAAGAAATAGAGTGTAATGACATTTTTACCCTCAAAAATATGAGATGTCTTTTAGATAGAATGGGGTATTGGTAAAATCATATGTATGGAATTTGTATAAATCTATAGTAGATAGTAGATATAGTAGACAGTAGATAGCGTCAATTTATAGGGGATGGATGACAAAGTAGTAGTTTAATCAATTTGCCCCCACTAACCTATTTAACTCTAGTGAAATCCTTTTAACCACAGTTGTGTAAACTCAGGGTACGGCCGTTACACTATACATCTGGACTAAACATCGAAATCCCAATAATAGACATGGAACCACGAGTAACCAAAAACCAGAGACAAAGTCAATAAGAGGGCAAAACCGTCGTTCCACACCAAAATTTTCACCCCCAAAAGCCCGGACGGCCAGACAGGCAGATAGGAATGTCAACGGGGCGGGCGGGCACGGGTATCTCACTACCCGGACCCGCCCCGTTTATTATAAATAGGCCCCAGACCCGTCCCGGACCCGCGCGGGTACCCGTTTAACGGGTTTTAAACTGATATTTTTTTAAACGGGTACCCGCGGGTATTTGTAAATTAATAAATAAAAAAATTTTAAAAATAAAATTTGAAATACCATAGAAAATTAGTTTTTTTAACACTATTTTTTGATTCATTTATATAAAAAAATTACGCATTTTGATATGCATTTATCGTATCAACTATTTATTAATATATAATTGTTAATGAATTGAGATAAAAAAACTAAAATTATGATAATAGAAACTTGAAAAATAACAACTAAACATTATCCAAAATATTAGGATAAAAGATTTAACAAAATGTGAATAAACATCCACTTAAACAACAACGACAATAGATGATAAAAAAAAAGGAAGAAACAACAGAATTTTCAACGGGTACGGGTACCCGGACCCCCGCGGGTCCGAGTACCCCGCTACCCAGACCCGCCCCGTTTATTGACGGGTAGCCAAAATACCCGTTTATTTGGTCCGCGGGTACTCGTTTATCTACCCGCCCCGGACCCGTGCCGGGTTTTACCCGCGGGTCCGGGTTTTTTTGACACCCCTACAGGCAGACACCAAAATCTACAGAAATGCGAAACGCAAAAACAAAATACTTTCCCCTTTTTTTATTTAATTTTTTTCTGAAAACGCAAAATTCGTTTCATGCAAATCCTACAAAACCCAAAATTTGACTCACTCAGTCACCCACACTCACTCTTCACTCTTTCATTTCATCTCTCTCTCTCTCTCTCTCTCAGCTTCTCTTCTCTGTTTTCATTTTCAAAACCCTATCACGCGTTCTACCCAGCTAGAGGATCAGCACCAACGACTCGGTACTTTGATTTTTACTGCTTTAATGGTTCTACATTTTGGTCTCATGCAAAACGCGATCGTTTTGCGTTCTCATTTTTTCTTGTGTTTTTCATGCACTAGGGTTTTGATTTCAGCTCCAAGACACTGTAATTGGACACACATTTCCTCTTCCGAGGTGAGAATAAGGTCAAAATGTTGTTTGATTTCATTATTTAATTTTTTTGTGTTTGTCTCTTTTTTTTTTTTAGATTTTGTTATTATTGCTGGATTTTAGTTTGACTTGCTCTGATTTCTTTGTTAATCATCATTTTGGGGTAAATTTTCAAGGCCATTGCAGTCTCTCTCTCTCTCTCTCTGGCTCTTATTTTTCTATTAATTTTTTTGTTTAATTTCTTAAAAAGTATGAAATGGAGACGAAGGTGAGTGAATATCTTTTTGTTTTGGTAAAAAATGATTCTAAATCTAAGTAGTTGAGAGATTTTTATACCCTTTTAAGGAGTTGGGTTAAATGATGACGACCTTGCATGAGTTTTTGGGTTGGGGTGTTAGCCCGCCTTTTTAGTAATTTTCTCTTCCATTGTTTGCTTTTTGCCTTTTTTCTGTTGAAAGTCGAAGCTTAATAGTAATGACCATGACTGTAAGTTATCTGTTGGCAGGTACTGTACCTGAGGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00623.23	RNA_pol_Rpb1_2	326	479	2.00E-33
PF11523.11	DUF3223	1902	1973	3.60E-26
PF04997.15	RNA_pol_Rpb1_1	44	257	2.00E-11
PF04998.20	RNA_pol_Rpb1_5	757	1173	1.20E-10
PF04983.21	RNA_pol_Rpb1_3	483	627	1.10E-07

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0046872	metal ion binding	Molecular Function
GO:0030422	siRNA processing	Biological Process
GO:0050832	defense response to fungus	Biological Process
GO:0035194	regulatory ncRNA-mediated post-transcriptional gene silencing	Biological Process
GO:0005730	nucleolus	Cellular Component

InterPro

InterPro term	Description
IPR006592	RNA polymerase, N-terminal
IPR000722	RNA polymerase, alpha subunit
IPR007081	RNA polymerase Rpb1, domain 5
IPR042102	RNA polymerase Rpb1, domain 3 superfamily
IPR007066	RNA polymerase Rpb1, domain 3
IPR007080	RNA polymerase Rpb1, domain 1
IPR044893	RNA polymerase Rpb1, clamp domain superfamily
IPR045867	DNA-directed RNA polymerase, subunit beta-prime

trEMBL

trEMBL term	Description
A0A9D5AWF7	_

SwissProt

SwissProt term	Description
NRPE1_ARATH	DNA-directed RNA polymerase V subunit 1

KEGG

KO	Description	Enzyme
K16251	DNA-directed RNA polymerase V subunit 1	[EC: 2.7.7.6]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G40030	nuclear RNA polymerase D1B
Medicago sativa L.	MsG0880043637.01.T02	_
Oryza sativa L.	LOC_Os02g05880.1	RNA polymerase Rpb1, domain 2 family protein, expressed
Cucumis sativus L.	Csa008144	_
Glycyrrhiza uralensis Fisch.	Glyur000057s00008991.1	_
Codonopsis lanceolata	Cl_chr07_35650T	_
Arachis hypogaea L.	AH08G23710.2	DNA-directed RNA polymerase V subunit 1 like

Expression pattern