Gene detail

Detail information of Am01G010280.1 Annotation

Gene ID	Annotation
Am01G010280.1	Transducin/WD40 repeat-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G010280.1	mRNA	Chr01	44190247	44209577	+

Sequences

CDS:

>Am01G010280.1
ATGATGTACAATGATCCTCATAATCCTCAGCACCAGCACCAACACCAGCATCAGCAGCAATACCCGCCGCAACAGCAACAGCAGCAGCATTTTCACCACCAGCAGCCAGGTCAGGAATTCCACCGTGGACCGCCGCCTCCGCCGCAGCATCAGCCGCCGCCAATGATGCGCCAGGCTTCCGCTTCGTCCACAAACCTCGCCCCGGAGTTTCACCACCCCGGTCCTGGAGGCCCCCCTCCTCCTCATTACGATGTTCATAGTGATATCCATGGCGCAAAAAGAATGAGAAAACTTACTCAAAGGAAGGCAGTTGATTATACGAACTCAGTTGTGCGTTATATGCAGATTCGTATGTGGCAGCGCGATTCAAGAGATAAGACAGTACTGCAACCTACAGCGGCAGCAGCAATTGATATGGTACCAGCAGTTGGCTATCCAGACAATCCATCCACAAGCTTTGCTGCTAAATTTGTTCATACATCTCTAAATAAAAATCGTTGCCCGATCAATCGTGTTCTTTGGACTCCTACAGGACGACGTCTTATTACTGGTTCACAGACTGGGGAATTTACTCTTTGGAATGGACAGTCTTTTAATTTCGAAATGATACTTCAGGCTCATGATCAAGCAATCAGATCCATGGTCTGGAGTCACAATGACAATTGGATGGTCTCTGGTGACGATGGAGGGGCAATAAAGTATTGGCAGAATAACATGAACAATGTTAAAGCCAACAAATCTGCTCATAAAGAATCAGTTCGTGACTTGAGTTTCTGTAGGACAGATTTGAAGTTTTGTTCGTGTTCTGATGACACCACAGTTAAAGTTTGGGATTTTGCACGATGTCAAGAAGAGTGTTCATTAACCGGCCATGGTTGGGATGTGAAGAGTGTTGACTGGCATCCTACAAAATCTTTATTAGTATCAGGTGGTAAGGACAATCTTGTGAAACTTTGGGATGCTAAATCAGGGAGGGAGCTTTGCTCATTTCATGGCCACAAAAATACCGTGCTATGTGTTAAATGGAATCAAAATGGCAACTGGGTGTTAACGGCTTCAAAAGATCAAATAATAAAGCTTTATGACATAAGGGCAATGAAGGAGCTTGAATCGTTCCGTGGACACCGTAAGGATGTTACTACTTTGGCTTGGCATCCGTTCCATGAAGAGTACTTTGTCAGTGGTAGTTATGATGGTTCCATCTTCCATTGGCTTGTTGGGCATGATACTCCACAAATTGAAATTTCCAATGCTCATGATAATAATGTGTGGGATCTTGCATGGCATCCTATTGGATACCTTCTGTGCAGTGGTAGCAGTGATCATACAACTAAGTTTTGGAGCAGAAATAGGCCGGGAGACAATGCTCGTGATAGATTTAACACTGGAATGCAAGGATATGCCGAGCAAAATCCTGTTGCTGGTCGTATGGGTGGTAATTTTGCAATGCCTGATGGCCCAACAACTCCAGGACCATATCCTCCTGGGCTGACTCGAAATGAGGGTACCATTCCAGGTGTTGGAGTTGCAATGCCCTTATCCATTCCTTCTCTTGATGCTCCTCAGGGGGAGCAGAAGCAGCCCAATCCTGGTTCAATGGGTGCACCTCCTCTTCCACCAGGTCCGCATCCCTCTCTTCTTACTACCAATCAACAGCAACCGTTCCAACAGAATCTGCAGCAGATTCCACAGCATCAACACCAGGCATTGCCCCATCAGATGGGTTCTTTGCCTATGCCTCCAAATATGCAACAACTACAGCACCCTTCCCATTCTCCTTTGGTCCCTCACCAACATTTGCCCCGCCCTCCACACCAAATGCAACTTGGAATGCCAGGATCTCTGCCTGTCCCTACGTCACATCCAATGCCAATGCCAGGACCTATGGGAATGCAAGGCGGAATGAATCAGATGGGTACTCCAATGCCACAAGGTCATTATGTGGGTATGAATCAAATGCATTCAGGATCTTTGCCTTCAAGCGGAGGGCCTCCTCTAGGAGGTTTCCCGAACAACTTGCCTAATATGCAAGGGCCACCGAATACCAGTTATCCTCAAGGTGCTTCATTCAACAGACCTCAAGGTGGACAAATGCCTTTGATGCAAGGATATAATCCTTACCAGTCTGGAAATCAATCTGGGATGCCTTCGAATGCACAACCAGGGGCACCACACTCTCAAATGCCTCAATAA

Protein:

Promoter(3k):

>AM01G010280.1
AGTTTCTTAAGCATTTGATGGTTTAATTCGGATTTACGATGACTTAGAATGATTTCTAGACAAATAGGAGGATGTTAATTGATTAAATTGATGTTGTTAATCAATTAGAGTAGTTAAAATCACCTAAGATATATTTTAGACTTGTGTTAATCGGTTAGGGGTACACTGTTAATAGATTAGAGCAATTAAAATCACCCAGAAGATATTTTGGACTCATGTTAATGGATTAGGAGTTGGGACTATTCTAAATGTGTTTTGGATGATGTTCAACCCTTCCTAAGCTAGTTTCAGGTAACCTTAATCAATGGATGATGACTAATAGAATGAGGGTCATAGAATGCCTTAGGAAATGTCAAGCAATTGATGGACTTGAGATAGTAGATATTGAACTAAGATGACTACATATGAATATGAAGTTGACATTATTATCTAGGAGTATGGAGGGATTGTGAAATAACTATATGACTAGAGATTATGATACTAGGGCAAGTGACCCCCTAGTTTTATGATGGTACCTTTGGACTTGGGAATTCTTAGGGACGCTGTTGATGATGATAATGATGATTAACGGGTTTACCCGTTTGAGGAACCTTATCGCAACATGGACAAGGGCTCGTCACAGTATGAGCGAGCCGTAACTCAGTGGATCGTTGGAGGAACCTTGTCGTAGTATGTGCAAAGACTCGTCGCAGATATGTATGAGTTGTACCTTAGTAATGATATATACACGGTTGATGTTATACGCTAAATGCACTGCATATGCATCAGACATGATAAGATTGTGCAGTGAGCAAATGATTATGAGAGTATTAATAGAGATAACCATGACTCGACATTGTGGGGAGGTCTTATGTAAAGGCGAGGCATTGCTAAAATACTAAAATGCCCTGACTAGACTATAACTTTTGCCCGGGATATTGAGGGCACTTTCATCCAGCTTATTCTGAGTAGTAGTTGGTACCACTCAAGATATTGGAGTAGCTGATATTATGATTATTAGGATTACAATGACGTTGTAGTCCTAGGACCGTTTGTTAGGCCGCAACGATGATGATTAATTAGTTGATAATTGGTTGTGTATGCTATATATGTTGTAACCACTACCGTTGATTGTTCTCATGTTATGTGATTTCCTCACTCTTCTTTCTTTGTGGCTACTCGTGTGTCATTGTGCATCTTTAGGTGAAGAGTCTGCTAATGATGAAGAGCCAGTCGACGTGGATCTCGATGAGTAGTTTATGCCGATGAAGATTACTTGTTGCTATTAGTATTGTTATTTGTTTTTAAAAGTTGCAATGAAGTGGTAAAGGCTCCGAGACATGTGACACAAGGGTTCCACGGTTCTTTTTACTATACTCTCGTTATTTAGTTTGATTTGTATTTCTGTGTTTGTTGGTGATAGTTGTTATTTCATTTGACTCAAGGTTTATTATAGACGTAATTTCTATTGAGTCCTTTAGTTAAGTTACTTATTTACAAATAAGGTGGCAGGTGTCACATTCCACATGCTCTAAATTTCACTAGTAAACTTTCAATTTATTCTCGAGTAAATATCTAATTTTATCCTTAAAATTATAGGACCATATCAACTTTGTCTCTTACATTATCAATATTCCAAAATGATATATAATTTGTATTCGCAGGGACTATAATGACATCAAGTTGGTAATGTTAGAGATGCATTTGCTCTTAGGGTGCATTGGCTAATAGATTCAGACGAATGGATGAACTTAATTACATTTTATTATTCTAGGGACCAACTTGAAATATTGATAATATATAGGACTTAGTTGCACAATATTTACACTTTCAAGTTCCGAATTGGCTATTTACTCGCACATTCTCAAATCTGACATCATATCCCTTATATTGTCTATCAAGCGTAAAGAAATAACAAGTAGTCTAAATTTTTTTCTGAAATCCATCGAACATTCCTAAAGTTTTATAAGTAGTCTTTAATAAGGATTAATGATAAGAATTTGATAAAACTTTAGGGACCCCTTACAAAACTTTAGGGAGATTACAAAATTTATGGACTACTTATTATTTTTATCTTGTTTAAGGACCGGTTAAAAGAGATAATATTAGTTTTAGGTTGATGACTAGGATGGTCCAACACTTAAAGTGGTTCTTGGTGGTCAAAACCGCGAAAATCGCTCCAACACTCCATTGAAGATCAACACTGTCCCTCGTAAGTATAAGCCGTGGTCTCTGATCTACGTCCACATGGTCCTAGATTTATCGATGTCATTTTGACAAAAAGCAACGAAAATCTGAATAAGTCAAAGTCTATGCACCCATATTGGTTTTGTTGTTTTTGGCCGAACCAACATCGACCAAGTCAATTTTGGGGACTATGCAAACATGGAAGAACATGAAGTTATATTTACGGATGGTGGCCCTGATCATCGTTAAAGTTTATAGTGATTTTCAAGCATTTGATCATCATAAGCAACTTGAAACGTTAGTCACTGCCTAGCTTTCAAAGTAAGCTAATTATGGCCTATAACATAATAAAGGGGAGGCAAGCTGCTAGAGTTATTTTAGAGACCAGAGATCTGTTTGGTAAGGCTCAATAGTTTATAGTGGAGAAATCGGTATAAATCAAATAGAAGTGTTTGGTAACACTTATAACGTACTTCTATATGCGTTTGAGCTTATAACATTTTGAGTGTGTTTGAGAGTTTAGAAGGGAGGACATGAGACTAATATTGTTAATTCCGTTCTCCGGTATTTTTTTCCTAATGTGCTGTTTAGCAAAACAGGAGGGACGTCATTGCAATTTCCCTATTTTAAATGAACTGTTTTTTTTGAGATCAAAACGCTGTCGTTACAGTTTTTTCTTCTCTAACTCGTTCTTTCCCGCTCCACATTTTTAGTTCTTCCTGAATCTGCCACCAGAATTTGGGGTTTAGGGTTTTTCTCCCTCATCTGCAATTCCAAATCTCCATTCCTCCCTCACTCCCACACTTCGCTCTCTGTCTCCAAAGCATAACCGCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00400.35	WD40	286	320	5.70E-39
PF00400.35	WD40	325	362	5.70E-39
PF12894.10	ANAPC4_WD40	275	345	5.80E-17

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0080008	Cul4-RING E3 ubiquitin ligase complex	Cellular Component
GO:0016301	kinase activity	Molecular Function
GO:0009793	embryo development ending in seed dormancy	Biological Process
GO:0009909	regulation of flower development	Biological Process
GO:0006338	chromatin remodeling	Biological Process

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR019775	WD40 repeat, conserved site
IPR001680	WD40 repeat
IPR045245	Pre-mRNA 3' end processing protein Pfs2-like
IPR020472	G-protein beta WD-40 repeat

trEMBL

trEMBL term	Description
A0A8B8LFV6	_

SwissProt

SwissProt term	Description
FY_ARATH	Flowering time control protein FY

KEGG

KO	Description	Enzyme
K15542	polyadenylation factor subunit 2

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G13480	Transducin/WD40 repeat-like superfamily protein
Medicago sativa L.	MsG0880043594.01.T01	_
Oryza sativa L.	LOC_Os01g72220.1	WD domain, G-beta repeat domain containing protein, expressed
Cucumis sativus L.	Csa008141	_
Glycyrrhiza uralensis Fisch.	Glyur000057s00008997.1	_
Codonopsis lanceolata	Cl_chr07_35350T	_
Arachis hypogaea L.	AH13G56750.1	Flowering time control protein FY like

Expression pattern