Gene detail

Detail information of Am01G009830.1 Annotation

Gene ID	Annotation
Am01G009830.1	SNF2 domain-containing protein / helicase domain-containing protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G009830.1	mRNA	Chr01	40976090	40985023	-

Sequences

CDS:

>Am01G009830.1
ATGGATTCAGCAGTTGATGTGTTACCAGCTAAACGCCCCGCTCCGGATGGAATTTCTCCCGAGGCTAAGGGATGCAAAAGATTGAAAACGAATTCATCAAATATTGTAGAATACAGCAATCCTTTTGCTATATCCGATGTTCTGAATCGTATTGACAGTGGAAAATTTGGAAGTGTAACGAAGGATATAGAGGCCCTTATATCACGAAAAATGCAAATACTGGGCCCTTACTTTGCAAGATATCCGAGACTTGTTAATCAATCACTGAAAGTGGTAATGAATCCAGATGAAGAAACTCATAATAAGTTTGAAAATAATGAAGATACCAGTAGTTCAAATGTCATAGACTTGGAGGAGAAGCACAGTGAAAAAGATGTCCCAGCTGCACCACCGTTGCCTGTCGTTATCCTTGATTCAGATGAGGAAGATGATAGGGATCACAAATCTTTTCTCCCGTTTCATGAAGTAGTATTACCAAGACCAATTCAGTCTCCTGCCATTAAAACAGTAGGTTATCATACTCCCACTGCTTACCACCATGGAGAAAGTGAAGATCTAAAAGTTGAGACAAGTCTGGCTCGGAAAGATAAAGGTGTTTATATTGGTGTACAAGAGGAAACTAATCTTGAGATTGATGCTGAAGAGGATGCGCTCAACGATATTTGGAGGGAGATGTCGATGGCTATAGAATGTTCTAAAGATGTTTCTGTAGAACCTCCAGTAGAAGAAAAAGCGGAAGAAGACGCCGACTGTGATCATTCTTTTGTTTTGAAAGATGACATTGGTTATGTCTGTCGTGTTTGTGGGGTTATTGACCGAGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAGAAGTACACGAACCTATATGCCTGATTCATGGGCCAAAGAAAAAACTGATGTATTTGGGCATAATATTGCTGGAGATGATATTGTGGTCACTGAATTATCCGCGCATCCGAGACACTCCAAACAGATGAAACCACATCAAGTTGAAGGTTTCAATTTTCTCGTAAGAAACCTGGCGGGGGACCATCCTGGGGGATGCATCCTGGCTCATGCACCAGGATCGGGTAAGACCTTTATGATAATAAGTTTCATGCAAAGTTTTCTAGGAAAGTATCCTGATGCCCGGCCACTAGTGGTGCTTCCTAAAGGAATCCTATCCACTTGGAAAAAGGAATTTCAAATTTGGCAAGTGGAGGACATACAGCTTTATGACTTTTACACAGTGAAGGCAGACAGCAGATCTCAACAACTCGATGTGTTGAACAAGTGGGTGGACAACAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCTTCCATTGTCTGCGACAATAGCAGTGACAATGTATCAAGGTATTGTCAAGAGATCTTGCTCAAGAAGCCATCGATTCTCATTTTAGACGAGGGGCATAATCCAAGAAATGAGAATACTGACATGGTACAATCCCTTGCAAAAGTTCAAACACCGAGAAAAGTTGTTTTGTCAGGAACCTTATATCAGAATCATGTCAAGGAGGTGTTTAACATCTTAAATCTCGTGCGGCCAAAGTTCTTAAAGATGGAAACATCCAAGCCTATTGTCAGGCGCATTCAGAGTAGGATTCATATATCTGGTGCAAAAAACTTCTTTGATTTAGTTGAAAACACCCTGCAGAAGGACACTGATTTTAAGAGAAAGATAGCTGTTATTCAAGATCTACGTGAGATGACAAGCAAGGTGCTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCCGGCCTGGTGGATTTTACCGTGGTACTTAACCTTACCCCTAGACAGAAGATTGAAGTTGGGAAATTGAAGCACATAAATAGAAAGTTCAAGATGTCTTCGGTAGGCAGTGCAATCTATTTGCACCCCAAGTTGAAGCCGATTGCAGAAAAATTGAAGCCTGAAGAAAAGCGTGAGAGTTGTATATCTGATAGTAAAATGGATGGTCTATTAGAGGAAATAGATGTGAAAGATGGTGTGAAAACAAGATTCTTCTGCAATATGCTAAACCTATGTGAATCAGCCGGGGAAAGACTGTTGGTATTCAGTCAGTATCTCTTACCTTTGAAATACTTGGAAAGGTTAGCAATGAAATTGAAGGGTTGGAGTCTTGGAAAAGAGATTTTTGTAATCTCGGGAGATTCATCCACTGAACAAAGGGAGTGGTCCATGGAAAAGTTTAACAATTCACCTGATGCCAAAGTCTTCTTTGGTTCCATAAAGGCATGTGGAGAGGGTATATCATTGGTTGGGGCCTCCCGAATCATTATCTTGGATGTCCATCTCAATCCATCAGTTACTCGACAAGCTATTGGTCGTGCCTTTCGACCGGGACAGACAAAAAAAGTTTTTGTTTATCGATTGATAACTGCTGATTCTCCAGAAGAAGAAGATCACACTACTTGTTTCAAGAAGGAATTAATTTCTAAAATGTGGTTTGAATGGAATGAGTACTGCGGTGATAGGGCCTTTGAAGTTGAAGCTGTTGGTGTCAAAGAATGTGGTGATCTTTTTCTTGAAAGTCCAATGCTAGGGGGAGATGTAAAAGCTCTCTATAAAAGTTAA

Protein:

Promoter(3k):

>AM01G009830.1
AAAGTGAGGAACTCACATGGAATGTGATGAAAATCACAATACAAGTCGAAATAATGCTCTCTCTTCACCAAACAAACCTCAAACTCGAAATGCTAGGAAACCAAGCAAACCCCAATGCTCCAACTTCGAATTCCAGTTCCCAATCTTTCCTTTTGGAAGTCTAATCTATAATGTGGCTCTCAAATGACTCATCAAAACTCTCAACACCATCATGCAAACCAAACTTTCAGAAATTTCCCACCATCCCCCAAGCCAAGTGTTTGCGAAATGGGGAAAATGGAGGAGAGGAAGATGAACTAGCGAGGTTCTTGAGCTCTCATCTTTCAAGTGTGATGGAATGATTAAGAGAAGAAAGAGGGTGGGTGATTTTTCAGATGGTGCTTTGGATTTGGAAAATGAGAGTTTGTGTTTTCCCTCTATCTTTCTCCCTAGCTTGACTCTCTCTCTTTTCTCCCCTTCTTTGTTTGTTTCTTTTTGAAAATGACAAGTGAGTGAATGTGAGGGAGTGTTGGAATTTCGGTTGTGTGTGTGAGTTAGTGTGTCTTAAATGTGAATTTCCCACCTTACCCTTATTCTTTCCTCAAATTCCTAATAGATCCCAATTCAATCAATTAATCCCTTTAGTAACTAGTACACTAATGCACACAAATTTTATTTTTAGGCAATCAATTAATAAAATTATTAACCAAGCATCAATCAAAGATAATTAAATCATTCAATCAACAAAGTAATTAAAAAGAATTACTTTGGGGTGTTACAAAGTGCATCTTTGATTTTATCCAAGCTAGAATATGGAAAAAGCTTAAGGACTGGAAAGATAAATCTCTTTCTTTAGCTGGCCATGTTCTCCTTATTAAGCCAGCTGGCCAATCCATCCCGACCTATATCATGGGATGTCTCCTGATTCCTAAGGACTTGTGTCACCACCTAGAAAGCATCATCAGCCACTTTTGGTGGGGTTGCAAGAATGGTGAGCGTAAAATTCACTGGATTAAGTGGGATGGCCTTTGCAAGCAGAAAAAAGGTGGTATGGGCTTTCGGTCTTTTAGGGATTTTAATGAAGCTCTATTGGCCAGGAAAAGTTGGCACATCTTATCCGACCCTAATTCTCTTATAGGCCAAGTCCTAAAGGCTCGGTACTTCCCTCGTAAGGACACCCTCTCTACCTCTATTGGCTACTCGCCTAGTTACATTTGGTGAAGAATTCATCATGCCTCATGGGTTATTAAGAAGGGCAGCTCTTGGGGAATCGGCAATGGGGGCAATATGAACATTTGAAGGATAACTGGCTGCCTATGCAAGTTGGGTTTCAGTGCTGGAGCACTAGGCCTCCCGACTGTTATCTTCATATGGTTAATCATCTTTGGACCTCGAATGTCAGCTTGGGATATAAATCTTCTTAGACCCATCTTTCTCCCCTTTGAAGCTAACTTTATTGCTCAAATTCCTATTCCTATGGAGCATTGTGAGGAAAAGCTCATTTGGGGCTGGTCTAAAGAGGGATTCTACACTGTTAAGTCAAGATACCATTTTATCAAGCACCAGGTTGATTCATCTAGAGCTTCCTCTAGTTTTGACCCTAATATTGGCCTATGGAACAAGTTATGGAAAATCAACTCCCCCCAAACACCTTCATCTAATTTGGCGCATCCTAAAAAGAGCAATCCCTGTGAGGAGTAGACTAAGTAAGGGTGTTCCTTGCTCTACCATATGCCCTCGGTGTGATTTGGTTGAAGAATCGATTGATCATGCTTTCTGTGATTGTGTTTGGGCTACTCAGATATGGATCTCCTATCCCCTAGAGCTTCGGTTTGACAAGCATAACAATGTAACCCTAAGTGATTGGATTCGGCACAGTACTGTTCTTGAAGCTCCACCTCTGGTTAAAGAAATGGTTGCCTCCATTCTCTATAGTATTTGGTGGGCTTGAAATCAAAGGATTTATGAAGAAAAAGGCAAGTACTTCTGACTGATTCGGTTGCTCAAGCCCTCTCTTCTCTATAAGACTTTCAATCGCTCCACCCCTCAATTTTGGAGCTTCCTAATCAGAAAAGCAAGTACTTGAGCAACCGAATATTGTACGCCTTTTGCTGATTAATATATGATGACTTGGGGTATTTTAAAAAAAAAGATTATAATAACTTTTTTGCCAAAAATGAGATTATAATAATGGTTAGTACATACTAACCATTGTCGATTCCCCATTTGGGGAATCGACAATGAGGAAAATCCAATGGTTAGTACATACTAACGACAATTTAGTGTTTGTGTGATGAGTGAGCGGGTAAATAAAAACACTAGTTAGTACATACTAACCACAAATTAGTGTTGGTGTGGTTACCAAACTTTTTTATTAAAAGAGAAATGACTATTATGCCCATTTAGTAATAATTACTGACGTATCGTTTATTACCGTAAGTTAGACTCAGAATGCTTACAGAAATGGTTTCTTACGCTTTTTTCTTTAACAATAATTTTTTTTTACCCAATTTCATTTTCCATTTAATTTCTAGGTTCTAACAATGCAAAGCAAACAATTCGTACACTTGTACAGTTGTACATTCGCAACGATCCGAATGCCCACGCCGCCACACGCAGCTGAGCGAAGCAAGGAGTGAAAAAAGGATTTCTCTTCGATCACTGACCGTCAGTTGTAGAAAACGACCAATCAAAACCCATCATTTCTCCACTCACACTGTACGCGCGACGCAGATGATCATTCCCCTCTAACAAAAGCTCAACGCTATTGCCATTGCCATCGTCACTCATCACTCACTCGCCCACTCACTTCCCTTGTCATTCCTCATCACCTTTCCATATTCTACAATCCTCTCTCTCTCTCTCTCTCTCAAAGCTCATTCTTCTGCTTCACCCGACCCAGGTAACTAACCCTCATTCTCTCTCTAAAAAAAATCAGAAACCTTCAATTTGATCATTTTCTTAAATACCTATAATATCCTTTTATTTTTCATTTGATTTTCAGATTTTGTGTAGTCCTCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00176.26	SNF2-rel_dom	349	537	2.80E-20
PF04851.18	ResIII	327	505	7.50E-11
PF00271.34	Helicase_C	674	788	2.00E-10

Gene family

Gene family	Subfamily
Transcription Factors Family	Others
Epigenetic Regulators	CHR35
Transcription Factors Family	SNF2

Gene Ontology

GO term	Description	Category
GO:0140658	ATP-dependent chromatin remodeler activity	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0005524	ATP binding	Molecular Function
GO:0016787	hydrolase activity	Molecular Function
GO:0004386	helicase activity	Molecular Function

InterPro

InterPro term	Description
IPR038718	SNF2-like, N-terminal domain superfamily
IPR000330	SNF2, N-terminal
IPR044567	SNF2 domain-containing protein CLSY/DRD1
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain

trEMBL

trEMBL term	Description
A0A1S2YWE7	_

SwissProt

SwissProt term	Description
CHR35_ARATH	Protein CHROMATIN REMODELING 35

KEGG

KO	Description	Enzyme
K10875	DNA repair and recombination protein RAD54 and RAD54-like protein	[EC: 5.6.2.-]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G16390	SNF2 domain-containing protein / helicase domain-containing protein
Medicago sativa L.	MsG0280008038.01.T01	_
Oryza sativa L.	LOC_Os08g19260.1	expressed protein
Cucumis sativus L.	Csa020770	_
Glycyrrhiza uralensis Fisch.	Glyur001234s00026341.1	_
Codonopsis lanceolata	Cl_chr02_55230T	_
Arachis hypogaea L.	AH08G24630.1	Protein chromatin remodeling 35 like

Expression pattern