Gene detail

Detail information of Am01G009800.1 Annotation

Gene ID	Annotation
Am01G009800.1	RNA-binding (RRM/RBD/RNP motifs) family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G009800.1	mRNA	Chr01	40908569	40919625	-

Sequences

CDS:

>Am01G009800.1
ATGGGAAAGAAAAACAGATTGAAGGAAAATGGCGGCACCGCCAAACAACATTCCTCCTCGACTCTTTTTGTCTCCAATTTGCCCTATTCCTTTTCCAGCTCTCAGCTTGAGGAGACGTTCAGCGAGGTTGGGCCTGTTAGGCGTTGCTTCCTGGTCACAGAGAAGGGGTCTGCCCAACATCGTGGTTTTGGTTATGTTCACTTTGCTGTTGAGGAAGACGCTAATCGTGCCATTGAGCTAAAGAATGGTTCATCTGTTGGAGGCCGAAAAATTTCAGTGAAGCTCGCAGCGCCTCGTCAGCCCCTTGAAGATCGGAAATCAAAACCAGATGAAACAAAAGCAGATCCAGCGTGTGAGGCAGATGATCTTGCAGAGTCAAAAGATGATGATAAAAACAAAAACATTTCTAGAGCAGAGAAACCTGTTTCAGTTTTGAAGGAAGAAGAAGGGCAAGTTTTGAATAAACAAAAAAACTCAAGGAAGCCCATGGAGATAAAAAAAGCAGCTCTCTGTAATGATGTAGTAGATGAGGGGGGTGGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTCATGAACTCTGACATGGCTGAAGATGTTCACCGCCAAGCCAGAGAGATTGGTACCGTTTGTTCTATTAAGTATCCCCTTTTAAGGAATGATCTCGAGCAACATGGTCTGCTGCAAGATGGTTGCACTCCGGATGCTTCAGCTGTACTTTATACAAGTGTGAAATCAGCTCGAGCTTCTGTTGCAACATTGCATAAAAAAGAGATAGGAGGAGGAACTGTCTGGGCACGCCAACTTGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCCAGGTCAAAGAAAGTGAAATAAGAGATGTGTTTTCATCTGTGGGGTTTGTGTGGGATGTATTCGTTCCAAATAAGTCAGACACAGGTTTGTCAAAGGGTTTTGCTTTTGTAAAATTCACCTGTAAGCAAGATGCGGAAAAAGCCATTCAAAAGCTCAATGGATCGAAGTTTGGGAAACGGCTCATAGCTGTTGACTGGGCTGTTGCAAAAAAGATATTCAATAGCGACACCAATGATGCTCTTGTTTCAGAGAAAGGGCAACAAAAGGTGAGTGATGAAGACGGTAATACTACTGAGGATGATGTTGAGGATATTGACAAGCCATCTGATCATGGAGATGATAGTGATATTGATGATGTCGTGGAGGAAGAAGATTCTGAAGATAATTTTGACAAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAACTTGATTACATCCTCTGTCAAAGATGGATCTGTAAATAACAATTCTACATGTTCTGAAGAAGATAAGAAGCCAAAATCCAAAGAAACTGTTAAGGAGGCAGATAATAAAGCAGCCAACGAGTCTGATAAGGTTTCAGGTGTTTCTAAGCCTGAAACTTCCAGCAGAGGCAAGCCATCAGATCCTAAGCCAACGGAAGAAGATGATTTGCAAAGAACAGTTTTTATAAACAATCTTCCATTCGAGTGTGATAATGAAGAAGTGAAGAAACGATTTTCTGGATTTGGGGAAGTAGAATATTTTGCTCCTGTTCTCCACCAAGTGACCAAGCGACCACGTGGGACTGGTTTTCTTAAGTTTAAAACTGTGGAAGCAGCTGATACTGCAATTTCAGCTGCCAGTGCTGCTTCTGGGCTGGGCATTTTATTGAATGGTAGATCATTAAAAGTCTTGAGGGCGTTGGACAAGAAATCAGCTCATGACAAGGAACTGGAGAAAGCAAACACCGAGGTTCAAGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGATGGGACTCCAGCCGCTGAAGGGGTCTCGGCCAGTGATATGTTAAAACGCAAAGAATTGGAAAGGAAAAAGAAGACAAAGCTTCAATCTCCAAATTTTCATGTTTCAAAAACTAGACTTGTGATCTACAACTTACCTAAGTCAATGACTGAAAAAGACCTGAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGTTGAAGTGTTTGAAAGATGAAAGGAAAGGAAAGGTTTCCCAAGAACGCCATTCACGTGGAGTTGCCTTTGTTGAATTCTCTGAGCATCAGCATGCCCTTGTGGCTTTGAGAGTTCTTAACAACAATCCTGAAACTTTTGGTCCCGAACATCGGCCTATCGTGGAGTTTGCACTTGACAATGTTCAAACACTAAAACTTCGGAAGGCAAAGCAACAATTTCAACAGCAGCCTCCTCACGACGGCAACAATGGCAGGGAAAATGATAACACTGGCAATGCAGGAGTTCGCACACACGTAAAGGACCGAAAGAGAAAATCTCAAGAGCATGACAAACCAGCTAAGGATACCGTACAGAAAACTACAAATGGCGAACCAGGTGATAAAGTGAGAAATGAAAGATCTCCTCAAGAGCACAAATCAAAAAGACAGAAAGGTAACCAAAAGAGTACAAATGCTGAAGTGTTATCACCTAAAGAAAATCCAAAAACTTCAGTGATGAGGTCAAAGAATAACCGAGACGGACAGAATCACGGTGCCAAATTACACAATGGTAAAAATACTGCCATTGACACCAACTGGAAGAAATCAGGAAACAGAGATGAAATGGGATTTAGAAAGAGGAAGAAGCAAAACGAAGAAGAACAAGCAGGAGAAAGGTTTTCAAGGAAAAGGCCAAAGAAGAGTAAAGGTTCAGCAGGAAAGGAAGTAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTTTCACACAAGGGTTCCCAAGGGAATGATGGTGATAAAAAACAGTCTAAACAACTTAGAAAATGGTTCCAATAG

Protein:

Promoter(3k):

>AM01G009800.1
TTTCTTTTTCAAATATCCTCACTTGATTCACTAAAATTAAGAAACTCAATTATTTAATTCCAAATTTATTTAAGAGCAAATCGCCAGTTTAGTCTCTAAGCTTACACCCTTTCTCCTATTTAAGTCCTAAAGCATATGAAACTAATAAGTAGTTCCTAAAGTATGTGATATCCATCAAATTACTTCCTAAAGTTTTATAAGTAGTCCCTTATAAACACTAATAAGATATATTTATTAAAACTTTAGATGCCAACTTGAAAGAGTTCAAAAAGTGTAGAGACTACTTATTATTTTAAATACTTTAGGGAAGTTTAGGAACTAAGTTTTGAATTTATTATTTCTTCGATTGTTAGAGTTGATAGAATTGAGAGGTCTAATTCGTAAGGCCTAGCTCAAATGGTAAATACCGAAATTGTTAGGCTGGATATCATGTCCCGAATTCGAACCCGGGATCTCATAGTGGTGGGCGTGAGTTTCTAGTGGCATTTGCCACTCCGTCTACGAACCAAAAAAAAGAATTGAGAGCTCTAGGTGCAAAATTTTAATTTTATGGGTCAAAATAAAAAGCATATAGAAAAACAAGTGCATATATGTATTTGTCGGGGGTTGCAAATGCACCCCACACATACAAGTAGATCCACCTATGCACACATAAATGAGTGCCTTTCGTCAACTTGTTGACCAATAATCTCTTTAAAAAGTTCACAAAAGGCACTCAGTGTTGTGTACTTGATCTCTATCAACTTGTTGATGAATGGATTCATCAACAAACCAACGAAGTATCTGAAATCCTAGAAAAAAATTAAGCGGCATGGTTACCTTCTTCGATGAGATAGTGGGTGAATAACGCCATGAAGCAGTAAAAAAAATTTAGTTGGTGTGGATGAGGAAAAACAGGGTGAAGTAATGTAGAAGAGGGGGAGTGGGGCCAGTTGGAGGTGGAGAGCCGGGGTGAGGGAAGTGAGAACGAAGTGAGAAGGAAGAGGCGGGAAATAAGCATGGCAATGGGGCGGGGCAGGGACGTATTTTGCATTCCCAATCCCCATCCCCAAATCCCGTATAGTTCCCCATTCCCCTACCCAAACCCAACAGGGATGAATTATTGATCCCCATTCCCGAACCCGTTGGGTTCGGGGATCCCCGCCCCAACCCCATTCCCGTAGCCACATCAATGTTTTCTTTTTCTTTTCTCTAAATGCTATTGACGTCTTCACTCTTCAAAGTGAGAAGTAACACCACTAGTCAATATTTCACCTACAAAACTAAAAATACAAGTTAAATATAAACATTAAAGTTGATAAATTTGGAAGGTAGTGATAAATAAATGGATGATAGATCTCACCTTCATCATCGGGGTCTATTTCATTGAGTAAAGTAGCATTCTCATTACTTAATTGAGAACTCATACCACCTATATATATGAAATATGAAATGCAGTACAATATAAATAGTAGTTAGTTAACATATACATAATTATTTGTCATTTCTTAAGATATGTAATTGAAAAAACAATTTAAAACATACCGTTGTTTTCGTTACTCCATAACCAACTTCTAGCACACATCAAAACCTCTAGTATAAGAGGGAGGCGTTAGCACTAACAAAGAAATTTAGGGTTTAGTTGAGATGTGGAGGGTTTCTAATATAAGAGGGGTAATATTGTAACTTTGTCCATTCGGGGCGGGTTCGGGGTGGAGACCTATATCCCCATTAACCGCCGCGTCCCCGTATTTTGATATCGGGGAAAACTCAAACCCAGACAAAACGGGGAAAACCGTCAAATCGAGGTGGGTTCGGGTTGTACCCACGAGTACGAGTTTTGTTGCCATGCCTAGCGGGAAAAGTCATATGGGGTGGGTGAAATTAATTTGTTATAAAAAATACACTACCAAAACTAACCATAACTTGACTGAGATTAAAGTTTTAGATAGGTGTATTTTGAGGGTGAAAAATTAAAAAATTGTAAGAGTGTATAAGAAAAACTAGATTCAAATAGTAACATTATTTGGGCCATACTTCATACAACCCTCAGCTAATCACTGGACACCCTAAACTTTGTGAAAAGACTAAAATGCCATTAATGAAACACATGCATTATATTTTTTTGAGAGTACGTTTCACATGAGAGTATTTTTGGAATATTTGAGAGTTGGGGGTGTTCTGTTACTAGATGGGGTTGTAGGAAGTATGACGCCCTTCTTTTAGCCTAACCACGGTGTAAAGCCCGAAAAGCCGAAATCATAAGAAATAGCAAAGCAATTCAACCCGAACCCCTAAAACCGTAAAACCAAAAGAAAGGCAACTCAACAATCAATCAACTTCCACACCGTCGCCCTCCCCTCTCACGCAGAACCCAGCTTCGTTCGTCTGGTCGAGTGCGGTGATACGCAGGTGAGTTTCGGTGGGCCTTCTTTTCTAGTTTAAACTCGCTGTACTGTTTCTAGTGTGTCCACTGCAGTTTTTACTTTGCATTTTTTTCCTGGGTGTTACTTCATTGCTGCCGTTTCACGCTTTCTTTTTTCTACTCGCGTTTTCGTTGCTTGTTAAATTCGAAGGAAGTCAATTATTGTTTAACTCTTGATGAGAGGTAAATTTATTTATAAATTATAATGCTGAACCATAGGATATTGTGTTTGTGGATTTTTGTGCACGTTTCATTATCTTATTTCTTACCAGTACATGCGATTATGGGGTGGGGGGTCTTGCCATGCACTAATTCTTATCTATTGAAGATATTTTGGCTGCAAGATGACAAGTTTCGCCTTGAATTTCAAAAAAGCCTAATACTGTGTTTGGCCTTATAAACAGCTGAGTCTTATAGAGATTAGAATGGTCTATATTCATACATGGTACTAGTAGGTGCTATTGGATAAACAGTTTAATTAGGGGCCCAATTTTTAAGATTTCAACCGGGTCTCTAACTTGTTTGGGACGGCCGTCTACTTAACCCTAATTTTTTGATTTTAATTGAATAAAGGGATTTGAAGTTAAGGTTGAGAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00076.25	RRM_1	22	91	5.90E-63
PF00076.25	RRM_1	285	354	5.90E-63
PF00076.25	RRM_1	508	566	5.90E-63

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0003723	RNA binding	Molecular Function
GO:0006508	proteolysis	Biological Process
GO:0004197	cysteine-type endopeptidase activity	Molecular Function
GO:1990904	ribonucleoprotein complex	Cellular Component

InterPro

InterPro term	Description
IPR035979	RNA-binding domain superfamily
IPR003954	RNA recognition motif domain, eukaryote
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily

trEMBL

trEMBL term	Description
A0A1S2YWE5	_

SwissProt

SwissProt term	Description
RBM28_HUMAN	RNA-binding protein 28

KEGG

KO	Description	Enzyme
K14573	nucleolar protein 4

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G21440	RNA-binding (RRM/RBD/RNP motifs) family protein
Medicago sativa L.	MsG0580029008.01.T01	_
Oryza sativa L.	LOC_Os03g58720.1	RNA recognition motif containing protein, putative, expressed
Cucumis sativus L.	Csa018755	_
Glycyrrhiza uralensis Fisch.	Glyur001234s00026344.1	_
Codonopsis lanceolata	Cl_chr04_46130T	_
Arachis hypogaea L.	AH18G29170.1	RNA-binding protein 28 like

Expression pattern