Gene detail

Detail information of Am01G009780.1 Annotation

Gene ID	Annotation
Am01G009780.1	structural maintenance of chromosomes 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G009780.1	mRNA	Chr01	40870883	40884182	+

Sequences

CDS:

>Am01G009780.1
ATGCACATCAAGGAAATTTGCTTGGAAGGTTTTAAATCGTATGCTACACGAACCGTTGTTCCAGGTTTTGATCCTTTCTTCAATGCCATCACTGGCTTGAACGGTTCTGGCAAATCGAACATTCTCGATTCGATTTGCTTCGTTCTTGGCATCACTAACTTGCAGCAGGTCCGTGCTTCGAATCTTCAGGAGCTTGTGTATAAGCAAGGCCAAGCGGGCATTACAAAGGCCACGGTGTCAATAGTGTTTGATAATTCACAGAGGAATCGAAGCCCTCTTGGATATGAAGACCATTCTGAAATTACCGTCACAAGACAGATTGTGGTTGGAGGGAGGAACAAGTATTTGATAAATGGGAAACTTGCACAGCCTAGTCAAGTCCAAAACCTTTTCCATTCGGTGCAGCTAAATGTTAACAATCCGCATTTCCTCATTATGCAAGGGCGCATCACTAAGGTTTTGAACATGAAACCGCCAGAGATATTGTCTATGCTTGAGGAAGCTGCAGGGACAAGAATGTACGAGACCAAAAAAGAGGCTGCACTAAAAACACTTGAGAAGAAGCAGAGCAAGGTTGATGAGATTAACAAGCTTCTTGATCAGGAGATACTGCCCGCTTTGGAGAAGTTAAGGAAAGAAAGGACGCAATACATGCAATGGGCTAATGGCAATGCTGAGTTAGATAGGCTGAGAAGGTTTTGCATTGCTTATGAGTATGTTCAAGCAGAGAGGATAAAAGATAATGCTACTTCTGAGGTGGAACAAGTAAAAGCCAAGATTGCTGAGATTGACGACATTTCTAAGACAACTCGGGTGGAGGTAAAGGAAATGGAGACTAAAATAGCTCAGTTGACTGCTGAGAAGGAAGCAAGCATGGGTGGGGAAGTGAAATCTCTGTCAGAGAAGGTAGATGAACTTTCCCAGAATCTTGTGAGGGAAACATCTGTACTAAATAATAAAGAAGACACTTTGAGGAGTGAAGAAGCCAATAAAGAACAAATTGTTAAAAATATTGAAGAATTGAAGCAATCTGTTGAAGAGAAGGCTTCTGCTGTTAAAAAGGCTGAAGATGGAGCAGCTGATTTGAAAAATAGAGTTGATGAGCTCTCGAAAAGCCTGGAGGAGCATGAAAAGGAATACCAGGCTGTTTTAGCTGGCAAGAGCAGTGGTGATGAGGAAAAATGCTTAGAGGATCAACTAGGTGATGCAAAGATAGCAGTTGGGAGCGCTGAAACAGAGTTGCAACAGCTGAAAACCAAAATTAGCCATTGTGAAAAAGAACTGAAAGAGAAAAAAAATCAATTAAAGTCCAAACGCGATGAAGCTATTGCTGTTGAAAATGAGCTCAGCAGTAGAAGAAAAGATGTGGAAAATATCAAAATAGGATTGGAGTCTCTTCCTTATAAAGAGGGTGAGATGGAAGCTTTGCAAAAGGAACGTGAATCTGAAAGGGATTGTGTGCAAAAGTTGAAGGATGAAATACGCAATATCTCAGCATACTTGGCTAATGTTGAATTTACATACCGTGATCCTGTCAAAAACTTTGATAGGTCAAAGGTGAAGGGTGTTGTTGCAAAACTCATAAAAGTGAAAGACAGGTCCACAGTGACTGCCCTAGAGGTTACAGCTGGTGGAAAGTTATTTAATGTTGTCGTTGACACAGAAAGTACTGGAAAGCAACTACTGCAGAATGGCAATCTTAGAAGAAGAGTGACAATTGTACCTTTGAACAAAATACAATCCCATATTGTCCCTTTGAACAAAATACAAGCTGCTGTTAGATCGGTGGGGAAGGAGAATGCTGAAATTGCACTATCTTTGGTTGGTTATGAAGAAGAATTGAAGAGTGCAATGGAATATGTCTTTGGCTCAACCTTTGTTTGCAAAACCATTGATGCTGCAAAGGAGGTAGCATTTAATCGGGAGATTAGCACCACAAGTGTCACTCTTGAAGGAGATATATTTCGGCCAAGTGGTCTTCTGACCGGGGGAAGCCGGAAGGGAAGCGGTGATCTTTTGAGGCAACTGCATGCTGTGGCTGAGGCTGAATCAAAACTTTCAGTGCATCAAAGAAGGTTATCGGAGATTGAGGCAAAGATCACAGAGCTTTTTCCTCTTCAGAAAAAGTTTAAAGACCTAAAAACACAATTAGAACTCAAGTCGTATGATCTTTCATTGTTTCAGAGCAGAGCTGAGCAAAACGAGCACCATAAGCTTGGAGAAGTAGTGAAGAAGATTGAGCAAGAACTTGAAGAAGCAAAATCTGCGGTCAAGGAAAAGCAACTCTTATATGAGAACTGTGTGAACACTGTTTCATCACTTGAGAAATCCATCAAAGAGCACGACAATAACCGAGAAAGTAGGATAAAAGGCTTGGAGAAAAAGATAAAATCAATCAAATCCCAGATGCAGTCATTTTCAAAAGACCTAAAGGGACATGATAATGAAAAGGAGAAGCTTGTCATGGAAATGGAAACTGTTATCCGGGAGCAAGCTTCCTTGGAGAATCAACTAGCATCAATGACAACACAGATTAGTAATCTTTCCTCAGAAGTAGAAGAACAAAAATCCACAGTTGTCGCTGCAAGGAATAATCTTGATGAAGTCCAGTCACAGCTGAATGAAGTTCGCCAGAAAATGAAGCAATGTGACAAGGAAATCAGTGGAATTGTTAAAGAGCAGCAAAAGCTTGAACATAAACTTAGTGAGAGTAATCTTGAAAGGAAGAGGATGGAAAACGAGGTAAAACGAATGGAGATAGAACAGAAAGACTGTTCTGTGAGGGTGGATAAATTAATGGAGAAGCATGCATGGATTGCTTCTGAAAAACAGTTGTTTGGTAAAACTGGAACTGATTATGATTTTTCTTCTCGCAATCCTGGTAAAGCAAGGGAAGAACTCGAGAAGCTTCAGACTGAACAATCTGGGCTTGAGAAAAGAGTGAATAAGAAAGTTATGGCAATGTTTGAGAAGGCAGAAGACGAGTACAATGACTTGATGTCAAAGAAAAATATAATAGAGAATGACAAGTCTAAAATCAAGAAGGTGATTGAAGAGCTAGATGAGAAAAAGAAAGAGACACTAAATGTTACCTGGATCAAAGTGAATAGTGACTTTGGATCCATCTTTTCAACACTATTACCGGGCACAATGGCTAAGTTAGAACCTCCAGAAGGATGCACCTTTCTTGATGGTCTGGAGGTTCGTGTTGCATTTGGAAGTGTATGGAAACAGTCATTGTCTGAACTGAGTGGAGGTCAGCGATCATTGCTTGCACTTTCTCTGATTCTGGCGCTGCTTCTTTTTAAACCTGCTCCACTTTACATCTTGGACGAGGTTGATGCAGCTCTCGATTTGAGCCACACACAAAATATAGGGAGAATGATAAAGGCTCATTTTCCACACTCACAGTTTATTGTGGTGTCCCTGAAGGAAGGTATGTTCAATAATGCAAATGTTCTTTTCCGAACAAAATTTGTAGATGGTGTTTCAACCGTTCAGCGGACTGTTGCAGCTAAGCAGAAGTGA

Protein:

>Am01G009780.1
MHIKEICLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSQRNRSPLGYEDHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKERTQYMQWANGNAELDRLRRFCIAYEYVQAERIKDNATSEVEQVKAKIAEIDDISKTTRVEVKEMETKIAQLTAEKEASMGGEVKSLSEKVDELSQNLVRETSVLNNKEDTLRSEEANKEQIVKNIEELKQSVEEKASAVKKAEDGAADLKNRVDELSKSLEEHEKEYQAVLAGKSSGDEEKCLEDQLGDAKIAVGSAETELQQLKTKISHCEKELKEKKNQLKSKRDEAIAVENELSSRRKDVENIKIGLESLPYKEGEMEALQKERESERDCVQKLKDEIRNISAYLANVEFTYRDPVKNFDRSKVKGVVAKLIKVKDRSTVTALEVTAGGKLFNVVVDTESTGKQLLQNGNLRRRVTIVPLNKIQSHIVPLNKIQAAVRSVGKENAEIALSLVGYEEELKSAMEYVFGSTFVCKTIDAAKEVAFNREISTTSVTLEGDIFRPSGLLTGGSRKGSGDLLRQLHAVAEAESKLSVHQRRLSEIEAKITELFPLQKKFKDLKTQLELKSYDLSLFQSRAEQNEHHKLGEVVKKIEQELEEAKSAVKEKQLLYENCVNTVSSLEKSIKEHDNNRESRIKGLEKKIKSIKSQMQSFSKDLKGHDNEKEKLVMEMETVIREQASLENQLASMTTQISNLSSEVEEQKSTVVAARNNLDEVQSQLNEVRQKMKQCDKEISGIVKEQQKLEHKLSESNLERKRMENEVKRMEIEQKDCSVRVDKLMEKHAWIASEKQLFGKTGTDYDFSSRNPGKAREELEKLQTEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWIKVNSDFGSIFSTLLPGTMAKLEPPEGCTFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAAKQK*

Promoter(3k):

>AM01G009780.1
CAAACAACCGATGTTAAATGTCATTTTTTTTTATCAAAAATGACTTTTAGCATCGGTTATTTGGAACAACCGATGCTAAATATCACTTTCAGGACATTTAGCATCGGTTGTTTCAAACACCCGATGCTAAATGTCATTTTTCAGGACATTTAGCATCGGTTATTTGGAACAACCGATGCTAAATGTCATTTTTCAGGACATTTAGCATCAGTTGTTTCAAATAACCGATGCTAAATGTCATTTTCAGACAGCAAAAACAGTGATGAAATGGACATTTAGCATCGGTTATCTGAACACCCGATGCTAAATGTGACATTTAGCGTCGGTTAAATAACCGATGCTAAATGTCTGACATTTAGCATCGGGCGATTTAGCGTCGGGCGATAACCGACGCTAAATGTCCAATTTAACCGACGCTAAATGTCTTTTTTGCACTAGTGGACTATACCCATTTCCAATGTTTAAGATATCAGTTATTTCAAATATACTACGTTAGTAGGACAATGTGTTATGCAGTGCTCCTTTGAAAGACTGGATGATAACTAATAACAATAAATTGTAAATTGACACAAACTAACAAAAAGGAAACAAAAGCAGATAAATTACTGTTTCTATCTTCAATTTTAAGTTTAGGGTTTTCAATCAATTTAGGTTTTTTATCAAACAATCAGGAAGAGAGAAGAAGAAAGCTACATACCTGTGCTTTTCAGACTCAGAAGCACGCAGGAAAAGAGAAGATGAAGAAAGCTTCCGTTGATGGCTTCGCGGAGGAGGGCTTCGCGGAGGAGGGCTTCGCTGTTCTCGCGAGAGAGAAGAAGAGAGAAGGCTTCGCGGAGGAGGGCGGTGGAGGACGGAGGAGGACGGACGAGGGCGGTGGGGGCTGGAAGAGGGCGGAGGAGAGTGAGTGACAAAAATGAAAAAGGTGTAAAATGAGAACTGATGAAGCTGCGCAGGGTTTTATGAGACTTTATAGTTTGCGACGGATATTTTGACATTTCCGACGACAATATCCGTCGGAAATTTGCGACGGCCAGAAAACTTCGTCCCAAACGTGAGCGGGAAGTTTAGTGCCTGTTCTGCTGAACATTTGCGACGACGTTTTCGTCGCAAATCCGTCGGAAATTGCGACGGATAAGGATTCGTCGGAAATTTTCGCAGGAAACAAGGTTTATTCTTGTAGTGAAACCCAAGAAGCATACTTGATATGGTTGAACAATTTTGACATTTCTAAAACCAACCATTTGATTGTACCAAAAAAAACCAACCCTTTGAATAAAACTGAATTCCGCATTGACCAAGTACACCACAACACAACCATCCAAATGAGATTATTCATTCTCCTGAATTTTTCTCTCTTTTGACTTTCTATCCAATCAACCAAATGAGAGAGATAAAACACTACTTTCTCTTTTCTTTATCTTATACTAGTGCAAAGATAGACACAACTTTTTTATTGCACTTGCTTACGTATTTTAAGTAGTTATTTCTTCTACATTTTTGTGAAAAAGATTAGTTACTTGTGAGGGGAGTATTTTACTATTTTATATTGTGCAAATACGTTAACCATCTATTATTAGAGTTTGAAGTAAAGGGCAGAATGATATAGCCTTAGGAAACAAAAAATGTAGTTACCTAATACCATCTCCTTTTTATTTTTTCAAAACCATTTTCTTTATATAATGATGATATATATATGATATAAATATCAAATAACACCTTTGTTTAAAATATATCAAATAATAATACCTTAAATCTACTCTATTTTTTCTCTTATATTTTTTTGTCACTTCCTCTTAATGCACTCCATCTATAGGGGTGGATTCAGTTAGTACTCGGGTTCGATTCCCGGCGTTGGAACAAATTGGAGCCAAATTTTACGTGCCTATTATTCGAACTCTGAATTGTTCAAAGCCCATTTCCCTTAGACACCGGAGCGGGGTCAAAGACCCCTAGACTAAAAAAGTATTGTGTTTGGTCTTAGAAGGTTGGGGTCATCATCTATTTATCTCATCATCATCCACGTTGGTGTCGGTATCCTTTTGAAATTGTTGTAATTTTATGAGATATTTCAAAAGTGTGGAACTCTCACATTGCTTGGCTTTCGAAATCCCAAAATCTTTATATACTTAAGTGTTATGAGAACTTGTTAACAAGCTAGTAAGTGGGAGTATAAATCTTTTGATTCCCCCCGCCCACAGGATCAACTTTGCTTTATTTTTATTTATCAAGACATTATATATATATATATATATATATATATATATATATATATATATATATATATATATTGAAAATGCCTATTTTGAGTTATTTTGATTAATTAGAATTATTTTTATTGAATATTACCGTTGGATATTTTCCTAACAACCATTTACTTCAGCTCTAAGTATTGTCTACATTCATTTAATTAAAATACAAGCTCCTCTTTGACTGTTACTTGGAGAACCTATATTAATGCTAGTCGAGTAGCACTTGATACATAACCGAAAATTTGAATTCAAAACTGCTCTTCTCTCATCTCCTGAAATTCCATACTTTCATTATTGCCCGTTCGGATGCCTCAATTATTATTGTACTCGGAACAAAACCTAGTATGGAATTTGTGCTTGTGAGGCGGGTAAATCCTTAAGGGCGAGTCGCACGTGTTGTCTCACTTCAACAATCATCGATCAACAATAATAATAAAGAGAAACTTGGGGTTATGTCATCATCATCCACGTTGGCGTCGGTATCCTTTTGAAATTGGCGAAAATCTCCCGCCTTTCTCCACTGAACTTGAACTGGAGCACACCAAAAACCCCCACCACTTATCTCACAAACTTCAAATTCTTCCCTTTCCACACTCTCTCTTTGCAGCACTCAACGTTCGGAAAATCACCCCAACAAAACGCTACCGTTTAGGGTTTCGATCTCCCAAACCCTAAATCAGTTCTTCCGGATCCATTTCCCCAACCCAATTTCACTTTTTAATTATTCTTTGTTCCTTTCGCGTTTCCGAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02463.22	SMC_N	2	1161	2.90E-58
PF06470.16	SMC_hinge	518	638	1.00E-21
PF13175.9	AAA_15	1	415	4.30E-10

Gene family

Gene family	Subfamily
Epigenetic Regulators	CPC3

Gene Ontology

GO term	Description	Category
GO:0055085	transmembrane transport	Biological Process
GO:0003682	chromatin binding	Molecular Function
GO:0015267	channel activity	Molecular Function
GO:0005525	GTP binding	Molecular Function
GO:0016491	oxidoreductase activity	Molecular Function

InterPro

InterPro term	Description
IPR024704	Structural maintenance of chromosomes protein
IPR036277	SMCs flexible hinge superfamily
IPR010935	SMCs flexible hinge
IPR027120	Smc2, ATP-binding cassette domain
IPR003395	RecF/RecN/SMC, N-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase

trEMBL

trEMBL term	Description
A0A1S2YWE4	_

SwissProt

SwissProt term	Description
SMC21_ARATH	Structural maintenance of chromosomes protein 2-1

KEGG

KO	Description	Enzyme
K06674	structural maintenance of chromosome 2

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G62410	structural maintenance of chromosomes 2
Medicago sativa L.	MsG0880043516.01.T01	_
Oryza sativa L.	LOC_Os01g67740.1	chromosome segregation protein, putative, expressed
Cucumis sativus L.	Csa018264	_
Glycyrrhiza uralensis Fisch.	Glyur001234s00026346.1	_
Codonopsis lanceolata	Cl_chr03_44070T	_
Arachis hypogaea L.	AH18G29230.1	Structural maintenance of chromosomes protein 2-1 like

Expression pattern