Gene detail

Detail information of Am01G009760.1 Annotation

Gene ID	Annotation
Am01G009760.1	carotenoid cleavage dioxygenase 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G009760.1	mRNA	Chr01	40804465	40813039	-

Sequences

CDS:

>Am01G009760.1
ATGGATTGCAGAATGATTCATGGTTTGCGCATCAAAGATGGAAAGGCTACATATGTTTCTCGTTTTGTGAAAACTTCACGTCTTAAACAAGAAGAATACTTTGGAGGCTCTAAATTTATGAAGATTGGAGATCTCAAGGGTCTACTTGGACTGCTAATGGTTAACGTACAAATGTTGAGAGCTAAATTGAAAGTTCTGGATGTTTCTTATGGAACTGCAACAGCTAATACAGCTATGGTATATCACCATGGGAAGCTTCTAGCACTCTCAGAAGGAGATAAACCTTATGCTATTAAAGTTTTTGAAGATGGTGATTTGCAGACACTTGGCATGCTAGATTATGACAAGAGATTGGGCCATAACTTCACTGCTCATCCAAAAGTTGATCCATTTACTGGGGAAATGTTTACATTTGGCTATTCGCATACAGCGCCATATATCACATACAGAGTAATTTCAAAGGATGGTTATATGCATGATCCTGTACCCATAACAATATCAGATCCCATCATGATGCATGACTTTGCCATCACGGAGAATTATGCAATATTTATGGATCTTCCTCTGTACTTTAGGCCAAAGGAAATGGTGAAGAATAAGACACTGATATTCTCTTTTGATCCAACCAAGAAAGCTCGTTTTGGTGTCCTACCTCGGTATGCTAAGGATGAGAAGCATATTAGATGGTTTCAACTACCAAACTGCTTCATATTCCACAATGCCAATGCTTGGGAGGAGGAGGATGAAGTTGTTTTGATCACGTGCCGCCTTGAGAATCCAGATTTGGACATGGTCGGCGGGGAGGCCAAGGAAAAGCTTGATAATTTCTCAAATGAGCTGTATGAAATGAGATTTAACATGAAAACTGGTGAAGCTTCTCAAAAGAAACTATCAGCATCTGCTGTAGATTTTCCTAGGGTGAATGAAAGCTACACTGGCAGGAAACAGAGATATGTATATGGAACCACATTAGACAGCATTGCAAAAGTTACTGGGATTATTAAATTTGATTTGCATGCCGAACCTGATTCTGGAAAAACAAAGCTTGAAGTTGGAGGAAATGTTCAGGGTCTCTATGACTTAGGACCAGGAAAGTTTGGCTCTGAGGCTGTTTTTGTCCCACGTATCCCTGGCACTGATTCTGAAGAAGATGATGGATACTTGATCCATTTTCTACATGATGAGAATACCGGGAAATCATTTGTCAATGTCATAGATGCGAAAACAATGTCAGCAGACCCTGTTGCAGTTGTAGAATTGCCTCAAAGAGTTCCATATGGTTTCCATGCCTTCTTTGTGACAGAGGATCAACTGCAAGAACAAGCCAATCTGTGA

Protein:

Promoter(3k):

>AM01G009760.1
AGACCTACATTGAATATTGTTTTTTTGACAAAATCTACATTTTGTTGGTGACAAAACCTACATTATACCATATGGAGCAGTATTTTTTAGGCTTAAATATGTTTTAGGCCCCTGCAAATATAGGGTGTTTTAGTTTAAGCCCCTGCAAAATTTTTTTTTTGTAAAAGCCCTTGCAAAATGAATTATTTTGTTATAAGCCCTTCTCAACATATCCAGCAATCATAGCATTCCATGTTAAGGCTAACATTTTAGTCATAGAAGGGCTTATAACAAAATATGTCATTTTGCAAGGGCTTTTAACAAAAATAATTTTTTGCAGGGGCTTAAACCAAAACACCCTATATTTGCAGGGGCCTAAAACATATTTAAGCCTATTTTTTATAAATAATAAATAAAAAAATAAAACATGACGGTTCGAACAATGCCAAGAAATCCCAGATGGAGGATCTTTCAAAGAACACAAGCTAGAATTTCCACACCACAAACGTGGCATCTGCTAGGCCAGCGAAGCAACTATGGATGTTGAACCATAGAAGATCAATCATCACTCACATATTAATTTCACTATCCACTATCCACTATCACAAACCCATTTACGTAAAGATCAAAACTCTGTAACAAAATGGAGGCTGAGAAGAAGGAAAGAGAAGGGATTGTGAAGGTGGAACCAAAACCCAACAACGGTTTCACTTCAAAAGCGGTTGATTTGTTAGAAAAGCTGATTGTGAAGTTCTTTTATGATTCTTCATTGCCTCATCATTGGCTTGCTGGTAATTTTGCGCCTGTTAAAGATGAAACCCCTCCTACTAAGGATCTTCCTGTCAAAGGATACCTACCGGTTAGTGCAATTGCCTCAATTTTTTATGAATTTTAAGTTGTGGAAGACCTAGATAGGAAAGGAAGAGAATCTAGATGATCAGAGAAATTTTTAATTTTGATGCACTGAAATTATGTGTTTAACTTTTTATTATTGTCAAACTTATTTAATGGGAACAAATCTTTTTAATGACTATAAAAAAGTTTTACTTTTGCTTATTGATGAGAAACACTAGCCTAGATTTGGAATTCTTATCAGAGGCTCATTTTAACTTAGTGTCCTTTATTTGCTAAGTGAATATTGAAGCAACTGTATTCTTGTGTAATTAATAAACCAAGATAGTGGAAATATGTTTCAGATATGTGAAGAATAAATAGGTTAAGAAATTCCCAAATCATTTGTGCAAGGCAAAATATAAGGTTTAAAAACATAAGAGAAATGCTCGCAACACTCTCTTTGAAATGCTAGCAACACTATGTGTAGCATGACTGTCTTTAGCACTCTCTCTCTCTCTCTCTCGCTAGTATTGAGTGAAATCTACGTAGGTCCCACTAAATTAGTAGGACCGACATGAATTTCACCAAAATGTAAAGAGAGAGTTGGAAGAGAAGCAGAGGCGGAGGGTAGTGTTATTGTGGGGTAGTCCCGACTACCCAAAAAATAATATATGTATTTGAATAAGTAGGTTTATTTTATATTTAGCTACCCCAATAATATATTATTTAGCTACTCTAACTAAGTTTATTTTTTAAGAAGATAAAAAAACAACAAGTCCATGAATTTAAGTCTATTAGTCTATTATTATCTGAAATTAAAAGAGAAAAATTGTCAAAAGTAAAATAAAATGACTAAATTCGCCAACCGAAAAAAATTGAGAGACGAAAAATACAAGTAAACTTTTATAGTTAGCCCCCTCATAAAATCGATGCTAGCTCCACCACTGAAGAGGAGTGTTAAAGAGAGTCTTGCTAACACTCCTCTTAAGCATAATCTCCTTCTTAAGGGGCGGACTCAGCTAGTACCCGAGTTCGATCCCCAGCGATGGAACAAATTGGAGCCAGACTTTACTTACCTCCCGGTCGAACTCAGGATATTCAGGGCCCATTTCCCCCTGGATATCGGAGGGGGTCAAAGACCCCTAGACCAAAAAAAAAACATTGAAAATTTCATTCATATGAAAGTTAAGCCAAAAACAACGAATCCGGCTAGCTATAAGTTGGAAAAGAACTGTATATTGGTTGGTTTATAGAATCCGTGTTTGTTGATTTAATGAAAAGATCTTGTGATTGTAAGATAATTTACAACTAGCAGTTTTTCCTCATTTTTAGATATTGTAAAAGTAGTCCATGCCCATCTTTCTTGCAGTTCTTTGATAATTATAGCTTCACTTGTGTTATGCTGTTCTTCTGTTGGTCTTTTTTGGTTTTCTGCTTTCTGTCCCCTTTGCTACTCACTGATATACAATATGTAAACTTTCCTGTAATACGCTCTTCCATTAGAACAATATCACGTCGTGCATCAAGGAGCCTATCATCATGCCACTATCACTTACCATTTGAAGTGTATTGCAGGATTGCTTGAATGGAGAGTTTGTTAGGGTGGGACCTAATCCAAAGTTTTCTCCCGTGGCGGGATATCATTGGTAAAGTTTGTCTCTTTTTCTTTGTATGCTTTGAACAGTATATTATGAGATCTTACACAAATCTTGGTGGAAAATACATATCTAGGTGATTCATATAGCTTATATCAATATATTGATTTTCGTTTTCCCAAAGTTACTTTTTACATCAAGGTTTGGCATCAATGTGGAGCTTTTTAGTTTATCTGAACTAACTTTTTTTTTCTTAATGTTACGTTTTATGCTTATACCGTGCTTTCCTTCTTTTGTTTTTGCAGGTTTGATGGAGATGGGTGTGTGATTCTTTCCCTTTATGTGAATATATATTTCGTTTGAGCTCGTTTTGGATGAATTTTTATATCAATAGTGGCAATATTTGATCCTTCTATTTCTTTTTGTTAGATATTATCATTGCAATTGCTTGGTGATATTGTTGAGCATCAACCTTCAATCAAAATTAAAATAATATTATTGTCATAATCCTTTATTGTACATTTTGACAATCCATTTTCATTGACCAGTGAGATATGTGAGCATTAATCTATCGTAGTGTCAATTTGTATCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03055.18	RPE65	5	433	1.60E-113

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0016121	carotene catabolic process	Biological Process
GO:0009570	chloroplast stroma	Cellular Component
GO:0046872	metal ion binding	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0016124	xanthophyll catabolic process	Biological Process

InterPro

InterPro term	Description
IPR004294	Carotenoid oxygenase

trEMBL

trEMBL term	Description
A0A1S2YWE9	_

SwissProt

SwissProt term	Description
CCD1_PEA	Carotenoid 9,10(9',10')-cleavage dioxygenase 1

KEGG

KO	Description	Enzyme
K00465	carotenoid 9,10(9',10')-cleavage dioxygenase 1	[EC: 1.13.11.-]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G63520	carotenoid cleavage dioxygenase 1
Medicago sativa L.	MsG0880043515.01.T01	_
Oryza sativa L.	LOC_Os12g44310.2	carotenoid cleavage dioxygenase, putative, expressed
Cucumis sativus L.	Csa001914	_
Glycyrrhiza uralensis Fisch.	Glyur000626s00022206.3	_
Codonopsis lanceolata	Cl_chr07_36930T	_
Arachis hypogaea L.	AH08G24700.4	Carotenoid 9,10(9',10')-cleavage dioxygenase 1 like

Expression pattern