Gene detail

Detail information of Am01G009380.1 Annotation

Gene ID	Annotation
Am01G009380.1	LOB domain-containing protein 18

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G009380.1	mRNA	Chr01	38605253	38609255	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM01G009380.1
CTGAGTTGATATTGGAAGCGACATCTATAAAGGATAACTTGCCAAAAAGTTATTATGAGCCTAAGATGCTAGTTTTGAACCGGGCATTGGAATGTAAGAATATTGATTGTTGTGAGGATGAGCACAAGTTGTTTTACGACAATGAATTTGGTAAAAACAATGGTGTGCTACTTGAATGCAAATTAAGTGGAAAGCCGAGGTATCATGTCCGTAAAACGGGAAAACTTAATTATAAACCCATCCCTGCAAAGTCAATGTTCTATTTGCCAATTGTTCCAAGGTTGTAGAGAATGTTTACATTGACTGGAATTGTGGAGAAAATGACGTGGCATTATGACAACAGGTGTACCTCAGACAATTCACGTCACGCATCTGACGGTGAAGCCTGGAAACACTTTAATCGAGTGCATTCAGATTTATTAAATAAGCAAGAATCAAGTTGATACAATGGTAATGGTTTTTGTATAGGGTGGTGCTGGGGATAGATGCTTGTTGAATTATATTGAACGGTGTTCTTGTCTGTTTGAGTGTTTGCAGATTAAGTAGAGTGAGTTGTATATGGGTTGGAGTACCCCTTATACTCCCTTAATACATTTTTTGCTTATAAAAAAGCAACAACCAAGCAATACATGCATGTGGAATGAAAGAAAACAAACAATACATCATTATTTTTATATCAAGAAACTAACACATAGGATAAATCAATCTATTGAAAAGTAAATATCATAGACTAAATAGCCAATTTAGTCCATGAAATTGTAGGATTATGCTACTTAGTCCTTCACATAATCAATATTTTAAATTGGTCCCTAGAAATACAACACTGTTTATCCATTTCGTCCTTCGTCCAATTTGTTAGCAAGTGCATTTCTCGCATTATTTACTTAGTTTCTAGCAAGTGCATTGTAGTCCGCGAATGTCAATGGAGGGACGAATTTGATTAACTTTTTGAAATTACAAGGATCATTTTGAAATATGAATAATGTGGAGGATTAAGTTGTACAATCCTATAATTTCAAGGACTAAATTTTCTATTTACTCAAATACCATACGTAAAGCTATAAGTTATGGTTCTTTAAGCCATCTATTTTTTTCTTTTAAAAAAAAGAGTCAGATAAGTTAACTTATGACTTAAAAACTAATTACTATATTATGCAGGACTAAGTTTAAAATAGCAGAGTTATGTTTCTTATCAAGTATTTTAACATTTTTAATGTAATAAAGTGTTTTTTATTGTTCAAAGAAATTAACTTGAATCAATTAGGTATAATATTTTTTTAACCTTCGGCATGTTATAAATCAAATTAGCAAGTAAATTTTTTTTAAAAGTTAATCAATTTGTTCACTAAATTGATCAAAAAATTGGTCTCTAAATCAATAACAAAGTACAAGTAATTTGACTTCTACTTTCGTTGCCATCATACTGGCACTAATGCACCAGATCACATCATAACTTCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTATTGGGATGAGTGACCCATTGGGAAGTCCTCATATTGCACCTCTTTTAAAAAGTCGATTGATAAAAAAAAATTAGTCGCTAAATATAATCGCCAAGTCATTTGCTAAAATCAGTCACAAAAGTGGTTGGTGAATTCAATGGCTAGCTTAGTCGCAAAAAGCGGTAGCTATATCAGTTGCTAAAATTAGTCACAAAAGTGATTGCACCTTTTTTTTTGGTCAAAAAAAAATCAATCGCTAAATGGGTCACCAAATCGGTCGCTAAATTCTGTCACAAAATCTGTCTAAATTCAGTTGCTAAATGGGGAATGTTAGTTTTCGAGGTTTGAACCATAGACCCCATTCTTGCAACTCCTTCATGTCCCTTAGCTCGCCAACTGAGCTACCTTCTTGGGACAATATGATGCAATATGTGCAATATGATGCAATATCCATCTGTACTGATTTCATTTTATGCAATATTCATCTATACTGATTTCATATTGTAATTCAATTCAACCCTCTTTTTACTACTATTAGTCAAAGGATCAATGAGTCAAGCATCTAGTGCCCCCCTTTTTACCATCTTTAGCCTTATGGAACATTGAACAAGGGTCGCATATAGTAAACATAATTAAGCAGCCAGTATTTTACTACCCATCTATATATGATGTTAAAAAAGTTAAAAACACACAATATTTACCCAATTTAAGACAAGTAGAAAACCTAGGAGGGCAGTTCACGTCATTTTCAAAAACTCATAAGCTAAGCATTTTGGCAGTTTGTAAAGAAAGGGAAACACAAAAGACCACGTCATTTTCAACCCTTCTGTGATTGAAAGAAATAGAGAAAGTAGAGTTAGCGTCTTTTGCCCTCCACGCAGCTTAAAACACGCAGATGCAAAATATAGACACCCCCCTTTACACGTTTTCACCCCCCCCCCCCCCCCCCCCCTCCCTTCTCCCCTCCTTATTTTTTATTATTATCTTCCTTTTAGAGTTTAATTTCAACAAGAACCTCTTTCAACAATTACATCACTTTTGCCTCAAAATCAAAACCTCCCTTCATTCTTTCCCATCCATCCATGTCTCACATGAATCACACATACATATGTGAAAGAAAAACGAGTTTTGTAGGATAAATTCACGAGATGAACAAGAAAAGAGGAAAGAGAATGTGTTGAGTTGAGAATAATAGTACTAAGAGAGACGGCTTATGGCATGTTTGCTTCACGCAAACATCTAACTATTGAAGGTTAAGCCTTTGCTCTTTCACGTGGCTTTAAAGTTTTCTTCTTACCTTTTTAAACCCCCTTCATTTAAATACTAACCCCACCAAACCCTATTTTCATACAATTACAAACACCCCCTCTCTCCCTCTTCTTCTCCTCTTTCTCTCTCTCTCTCTCTCCATCTCTCTCTCTCTCTCTAATGCTATGAATATCCCATAAACCCTACTTTCTTAACCCTATATAGTTCAACATCTTTTTCCAACTATTACTATAACTAATCTTAACCTAGCTAGCTAGTTATAAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03195.17	LOB	29	127	8.80E-38

Gene family

Gene family	Subfamily
Transcription Factors Family	Others

Gene Ontology

GO term	Description	Category
GO:0045893	positive regulation of DNA-templated transcription	Biological Process
GO:0010089	xylem development	Biological Process
GO:1990110	callus formation	Biological Process
GO:0010311	lateral root formation	Biological Process
GO:0010199	organ boundary specification between lateral organs and the meristem	Biological Process

InterPro

InterPro term	Description
IPR004883	Lateral organ boundaries, LOB

trEMBL

trEMBL term	Description
A0A8B8JZQ2	_

SwissProt

SwissProt term	Description
LBD18_ARATH	LOB domain-containing protein 18

KEGG

KO	Description	Enzyme
K21994	LOB domain-containing protein 18

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G45420	LOB domain-containing protein 18
Medicago sativa L.	MsG0880043463.01.T01	_
Oryza sativa L.	LOC_Os03g14270.1	DUF260 domain containing protein, putative, expressed
Cucumis sativus L.	Csa025829	_
Glycyrrhiza uralensis Fisch.	Glyur000040s00007376.1	_
Codonopsis lanceolata	Cl_chr07_01200T	_
Arachis hypogaea L.	AH02G25880.1	LOB domain-containing protein 18 like

Expression pattern