| Gene ID | Annotation |
|---|---|
| Am01G006390.1 | pentatricopeptide (PPR) repeat-containing protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am01G006390.1 | mRNA | Chr01 | 24956817 | 24959800 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 339 | 375 | 7.70E-79 |
| PF13041.9 | PPR_2 | 472 | 519 | 7.70E-79 |
| PF13041.9 | PPR_2 | 542 | 590 | 7.70E-79 |
| PF13041.9 | PPR_2 | 647 | 690 | 7.70E-79 |
| PF01535.23 | PPR | 340 | 366 | 1.10E-72 |
| PF01535.23 | PPR | 475 | 505 | 1.10E-72 |
| PF13812.9 | PPR_3 | 473 | 517 | 9.10E-47 |
| PF13812.9 | PPR_3 | 532 | 590 | 9.10E-47 |
| PF14432.9 | DYW_deaminase | 859 | 951 | 2.70E-37 |
| PF20431.1 | E_motif | 761 | 814 | 1.10E-15 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0008270 | zinc ion binding | Molecular Function |
| GO:0009451 | RNA modification | Biological Process |
| GO:0043231 | intracellular membrane-bounded organelle | Cellular Component |
| GO:0003723 | RNA binding | Molecular Function |
| GO:0004519 | endonuclease activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046848 | E motif |
| IPR032867 | DYW domain |
| trEMBL term | Description |
|---|---|
| A0A1S2Z7I1 | _ |
| SwissProt term | Description |
|---|---|
| PP297_ARATH | Pentatricopeptide repeat-containing protein At4g01030, mitochondrial |
| KO | Description | Enzyme |
|---|---|---|
| K23541 | Ca2+/H+ antiporter, TMEM165/GDT1 family |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT4G01030 | pentatricopeptide (PPR) repeat-containing protein |
| Medicago sativa L. | MsG0080048802.01.T01 | _ |
| Oryza sativa L. | LOC_Os05g50950.1 | pentatricopeptide repeat protein PPR986-12, putative, expressed |
| Cucumis sativus L. | Csa020996 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000194s00016325.1 | _ |
| Codonopsis lanceolata | Cl_chr06_42580T | _ |
| Arachis hypogaea L. | AH12G03590.1 | Pentatricopeptide repeat-containing protein At4g01030, mitochondrial like |