Gene detail

Detail information of Am01G006320.1 Annotation

Gene ID	Annotation
Am01G006320.1	cyclic nucleotide-gated channel 13

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G006320.1	mRNA	Chr01	24455504	24460487	-

Sequences

CDS:

>Am01G006320.1
ATGAGTGCAAAGGGACAGAAATTTGTGAGATTTGAAGACTGGAGGTCAGAGTCATCATCTTTTAATGTTGATCCATATGAATCTTCTTGTGATGGACTTGAAAAAAGAAAAATTAAATCAAGTGTAACTCCTACAAGTGATATCTCAGTAAAAAAATCAGCTTCTAAGAGCAATGTTCTTGATCCACAAGGACCACTACTTCAGAAATGGAATAAGATATTTGTAATAACATGTGTCATGGCAGTCTCTGTTGATCCATTGTTCTTTTATATCCCTATGATTGATTACGAGAGAAATTGTCTTGATTTGGATGGAGCATTGAAGATCACTGCTAGTGTTCTTCGCACGTTCTTCGATCTTTTCTACATTCTTCGCATAATCTTTCAGTTTCGAACCGGGTTTATTGCACCTTCTTCACGTGTGTTTGGAAGAGGTGAACTTGTTCATGATCCTGTTGCTATAGCAATAAGATACTTGAGTTCTCATTTCATCATTGACATTATGTCAATTTTCCCACTTCCTCAGATGGTGATTTTAGGTATGATTCCAATTCCAAAATGCTCAGTTCCATATGTAGCAAAAGATTTGTTCAAGTATACAATAATAATCCAATATGTGCCAAGACTTTTGAGGATCTATCCTTTGTTCAAAGAAGTAACAAGCACCTGTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTATTTCTCTATATGCTAGCAAGTCATGTTGTTGGAGCTTTTTGGTATATGTTTTCGGTAGATTCGCAGCTACGATGCTGGCGTCAAGTATTGAAGAACACTACATTTTCTAGTGATTCCTACTTGAGTTGTGAAAGAAGAGTGAAAAGAAGAGTGAATCTTGTTGTTTTGTCACTTCTCAACAATTCTACTTCTTGCCATTACAATGATCCTGATGACATTATTGATCCATCAGTTTTCAATTTTGGAATATTTATAGATGCTCTAAAGTCTCATGTTGTAGCATCAAATGCAGATTATTCCCATAAGTTTTTCTATTGCTTTTGGTGGGGTTTGCGCAATGTAAGTTCTGTTGGACAAAACCTTAAGACAAGTACTTATGTTGGGGAGATAATCTTTGCCATCTTCATTGCTGTCTTTGGATTGGTTCTATTTGCATTACTTATTGGAAACATGCAGAAATATTTACAATCAACAACTGTTAGAGTTGAAGAGATGAGAGTCAAAAAAAGGGATGCAGAACAATGGATGTGCCACCGTATGCTACCTGATTACTTGAAGCAAAGAATCAGAAGATATGAACAATACAAATGGCAAGAAAATAGAGGTGTTGAGGAAGAAACATTGATCCGCAACCTCCCTAAAGATCTCCGAAGAGACATAAAGAGCCACCTTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAAAATGAATAAACAGCTATTGGATGCAATGTGTGATAGATTGAAGCCAGTGTTATATACAGAAAAGAGTTACATTGTTCGCGAAGGAGATCCAGTGGACGAAATGCTATTCATAATGAGAGGAAAACTTGCTACTACAACAACAAATGGTGGAAGAACTGGCTTCTTTAACTCTTCTGTACTTAAAGCTGGTGATTTCTGTGGAGAGGAACTTTTAACATGGGCCTTAGATCCTAATACCTCTTCAAATCTACCTATTTCAACCAGAACAGTTGAAAGTATTTCAGAAGTTGAAGCCTTTGCTCTCATGCCTGAAGATTTGAAGTTTGTTGCTTCACAATTTAGACGTCTTATTAATAGCAAACAACTTCAACATACTTTCAGGTTTTATTCCTTGCAATTTAGAACATGGGGAGCATGTTTCATACAAGCAGCATGGCGTAGGTACAGGAGAAAGAAGGCTCAAAGGTTGTTACGTGAAGCAGAAGAAAGGCTACATGCTTTAGAAAATGAAGAACAAACTTCACCTAGCTTTGTTTCCACCATGTATGCACAAAGATTTGCATCCAATGCATTACGGCCTTTGAGAAGTGGCAAACACAGCAGAATGCCACAGAAGACACAAAATTGTGTGCCTCCGAAGCCAAAAGATCCAGATTTCACTGCTCAAAAGAACTAG

Protein:

Promoter(3k):

>AM01G006320.1
TGAAGATTTCTTTGATAATCCATTCAACAAAGCATAACCTAGCAATAACCATAAATAATAGATATTAACAAAACAATTTACATGATTATCAAAGAAAGGGACTGTATCACATTACTTATTCAATCCGTACAAGTAACCATTATGAATCAATGAGCAGAGCATTTCAAATTCAACATGGCTTTGTTTATATATGAATCAATGAGCAGAGCATTGTAATGTTAATACTCTATTTGTCAATTTACTACCATTGTGTACACAAAATTGTAAATGTAATAAAATCAGAAACAGGACAACAAGAAACAGGAACAGCAAGAAATTCATGAAACTATGCAACTATATGAATCAAGTTCTTTGTGTAACAGCAACTATATGTAAATCAGATAAACAAGTTCTTTGTGTAACAGCAACTATATGAATCAAGTTCTTTGTGTAAATTGATTAACACATGAAGAGGAACGCATAGCAACTACAACAGTGTATCACTGAACATCCCAACAATCAAACAACTCATTCCTACTATAAAATCAGAGAAAACAGACCTGTGTTGGTTCAGCAAAGCAGGATGATGGCCGAAAATAGAGGTTTTGAGATCTTCAAGTCTTCACTCACAACAAATTTCTTCAACCTAGATTTACAAATAAACAGAAAACGATTCTTCACTTAACAATCTGGAAAACGATTCAAAAGAAAAAATGATAGAGTTGCAAAAATTATCACGAACTAACCTCTGAGAAAGAGATCGCGCAGAGAAAGAAATCGCGCAGAGAAAGAGAAGGAGAGACACTGGAGAAAGAGACGCTAGAGAAAGAGATCGCGCAGAGAGACGCCGGAGAAAGAGACGTCGGAGAGAGAGAGATCGCGCAGAAGAGAGATCGAGGGCGGCGACTTGAGAGATCGAGAGATGAGAGAATGAACTCAGAAATTAGGTTGTCTATTTTGGGAATTTTTGAGTTTTACGAAGGGCAATTTTGCCAATTCACAACCAAAACCCCCTAAAACCCCCCAAATTGGGGGAATTCGAAAATGGACCATCAGGAGGGGTTAGGAGGGCTTACCAAAATCCCCAAAACCATCCCTTTATTTTTGTAAACTCCCAGGTGTTTTAGGCTTCCTATATGACACAACATTTTTTATATATAAAAACAGGTAGGAGTACTCTTTCTCCTTGATGACTTTTCCCTAAAAAGGGTTTTGTATCCAAAGATTTTAAGGAAGCCCCCTTTCTTTTATTTGCCTTAAAAAAATAGCTAGTGATGAGTTGAGCTATTCAATTAATACTCGATGAAAGGTTCACACTGTCATCCGTTAAGTTATTTAATCAGCATTTTATTAAATAGTAAACTCCCAAATTGAAAACCAACATAGAGGGGAGTCTCCTCTACACTCTCTTTTGCTAATCCCTTGTTCCCTTGAAACCAATTAACACATATCTAACTGAATTGTCTATTTGTGTGTTGATTGTAGAATAATACAAATCTCATTACTATTTGATCAAAAGTTATATTAGATCGCTTTTTGAATTTCATCAATTTGGTTATCATTAGTATATCAAGTATGGTAAAAAAGTATGGTAATTAAAAACACTATCAATAAATAGTATAAGAAGTATAACTTTCAATGTTTCAAAAGTTTATCCGTTAGGAAACAAATCATAATTGTTGTAGACTTGCATTTTATATAAGGAATGATGAATAAGAGAAAGCATAATATTTGTAATTACATGAAATATGCAATCCCAAACAATACAATGGTCCAAGCATATCAAAATGATAGAGATATATATGATACTAAATTATTGTCACCTCTTACATATCTCATAGTAAACTCCCACAAACTCAAAGCAAAAAACTTAACCAAACCAATATGAGCTATGCCAAGCTAAAACCTAAGAGAGCATCTCCGTCCAAAATCTTAAGACATTGGTTATATGTTTCACCTCTTATGAAAGATAAAGTTAGTTAGTTGGTTACTTAGGTAGTTAGTTAGTTAATTGTTTATGTAATCTTTTATTCTATAAAAACCATATTTGTTTTATCTTTGTAATCACTCTTTACCATTCAATAAAAATTGTTGAATTTCTCTCTTTCTCAATTCTTCTAACACCTCTCTCATATATGTTTCATTGAACTCATTCCTAGTTGATGTCCCACTTGAATTTACAATGATCCATACTATTCATAACATTGTGTTATACCAAGCTAAACAAGCTTGTTGTGTACAAAATAAATTTGATAATAGTATTATGTAAAAACTAAATATTTAAAACCTTTTTTTGTTAATAAATTATGAGATCCAAAACCCTCACCATTCAATATCGTATGTTGTACTGTATTTGCATGTAAGTCATGAGCTAACAAGGATTCAATAACATAAAACTTTTCTCACATAGTGTTAAGTCCTCTTATTTATCTCACTCATTCCCATTTTCTTTTTATATGCGTGAACGCAGTGACCATATATCAAAAGTCTTTCTCTCTTTCTTTCTTTCTTCAAAAGACTGCATGTAACCTTTTTTTGCACTTTGCTTTATTTCTTTGATAAGGAAAGGTTAACAGAGAAGAGAAGGGACTTCATACTTATCAAGTAACCTTTTGAACGCAGTTCCTTCTTATTTATTATTCTTTTGTTTCATCTTATGCTGTTACTTACTACTTCATTTCATCTTATGCTGTTACTTACTACTTCATCTTATTATTCAATCTTCACCTTAGATACTTTTTAAAAATAGATAATCAAGTATTTCAGTCATGGTTTCTGGTTAGTGTTATATTTTTTCCTCAGTAACATATGTTACATAGTTACTAAAATAATATAATTGTAACTGAGAAATGATTTATAGCCATGCAGAACTTACTGAATTTAGAGGCACTCTGAGTAAAGTGTATTTCTGAATTGAAGATGGATTTTGCAGGCCTGAATCTTCTGTTGTCCAAGTAAAGTGAGAGTTTTTTTCTTCTATAAAGCATAGAGACTCTCACTGGGTGCTAAAGCTGATTAATC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00520.34	Ion_trans	70	400	3.30E-34
PF00027.32	cNMP_binding	492	581	7.50E-07

Gene family

Gene family	Subfamily
Transporter family	VIC

Gene Ontology

GO term	Description	Category
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0030553	cGMP binding	Molecular Function
GO:0005516	calmodulin binding	Molecular Function
GO:0043565	sequence-specific DNA binding	Molecular Function
GO:0003700	DNA-binding transcription factor activity	Molecular Function

InterPro

InterPro term	Description
IPR014710	RmlC-like jelly roll fold
IPR005821	Ion transport domain
IPR018490	Cyclic nucleotide-binding domain superfamily
IPR000595	Cyclic nucleotide-binding domain

trEMBL

trEMBL term	Description
A0A1S2YVQ6	_

SwissProt

SwissProt term	Description
CNG13_ARATH	Putative cyclic nucleotide-gated ion channel 13

KEGG

KO	Description	Enzyme
K05391	cyclic nucleotide gated channel, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G01010	cyclic nucleotide-gated channel 13
Medicago sativa L.	MsG0780041753.01.T01	_
Oryza sativa L.	LOC_Os06g33570.1	cyclic nucleotide-gated ion channel 1, putative, expressed
Cucumis sativus L.	Csa013873	_
Glycyrrhiza uralensis Fisch.	Glyur000669s00020858.2	_
Codonopsis lanceolata	Cl_chr07_06770T	_
Arachis hypogaea L.	AH12G03660.1	Cyclic nucleotide-gated ion channel 1 like

Expression pattern