Gene detail

Detail information of Am01G005980.1 Annotation

Gene ID	Annotation
Am01G005980.1	senescence-associated E3 ubiquitin ligase 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G005980.1	mRNA	Chr01	22973762	22978086	+

Sequences

CDS:

>Am01G005980.1
ATGCTATCAGATTTAGGCATTTGGAAATTGATTAGGTTAGTGTTATTGATTAATGGGAAGAAAAGGGATTATATTTCCTTTACTGAATTGTGTTGCAAGATGATGGTTGTAGATTTGTTCACTTCTGGTCCTACAACAACAGCAATTTCTCAAATCATAGATACCATAGGAGAATTCCTAATTCATGCTAGTGATGTTCTTGTGAAGAAAGATAGTTTTAAGGAACTTGGAGCTTACATGGAAAGAATTACACCAATTTTAAAAGAATTGAGGAAAGAAATAGATAGGGATTCCGAGACATTCAATCGCGCAATTGAGGTTATGAATCGCGAAACTAAAGATGCAAAGCTACTTGCTATAGAATGCAGTAAGAAGAGTAAGGTTTATTTACTGATGAATTGTAGGTCTATTGTTAAGAGGTTAGAAAATCACACAAAGGAGCTTAGTAAAGCACTTGGTTTACTTCCTTTAGCAACAACAGGTCTTTCTTTAGGAATAAGGGATGAGATTGAAAAGCTGTGTGATGATATGAAGGAAGCTGGGTTTAAGGCAGCAGTAGCAGAAGAAGAGATTTTAGCGAAAATCGAGTCTGGGATAAGGGAAAACAATGTTGATCGTTTCTATGCGAATAATTTGTTGACTCTTATTGCTGAAGCTGTTGGGATTACTAATGAGAAGTCAACAATGAAGATGGAACTTGAAGAGTTTAAGAAGGAAATCGAAAATGCTCGGATTAGGAAAGAATTGGCTGAAGCTATTCAAATGGATCAGATCATTGCTTTTTTGGAAAGGACTGATGTAACCTCATCACCTAGAGAAAGGAAACTGAAATACTTCGCGAAACGCCAATCTTTGGGGAGTCAAATTTTGGAACCTTTACAGTCATTTTATTGTCCTATCACACATGAAGTTATGGTGGATCCTGTAGAAACTTCATCAGGGCAAACATTTGAGAAAAGTGCAATAGAGAAGTGGTTTCTTGAAGGAAATCAATTGTGTCCTTTGACTTTGATTCCTTTAGATACTTCAGTTTTGAGGCCTAACAAAACTTTGAGACAGTCTATTGAAGAATGGAAGGATAGAAATACAATGATTACAATTGCTACATTGAAAGATAAGATTCAGTCTAGTGATGATGATCGAGTGTTGGATGGTTTGGGAAGTCTTCAGGATTTGTGTGAACAAAGGGATCAACACAAAGAATGGGTGATGCTTGAGGACTACATAGTAGTTCTTATCCAAATTCTCGGATCGAAAAACCGCGATATAAGGAATCGCGCTCTTGTCATCCTTTGCATTCTAGCCAAAGATAATGAAGAAGCTAAGGAAAGAATTGTAACTGTTGATAATGCAATTGAATTAATCGTCCATTCTCTTGGACGTCGTCCGGCAGAAAGGAAGTTAGCAGTAGCATTACTGCTTGAATTATCAAAATATGATTTGGCGCGAGAACATATTGGAAAAGCTCAGGGTTGCATACTGCTACTGGTGACCATGTCAAGTGGAGATGACAACGAAGCTGCTAGAGATGCAACTGAGCTATTGGAGAATCTTTCATACTCTGATCAGAATGTTATGCAAATGGCGAAGGCAAATTATTTCAAGCATTTATTGCAGCATCTCTCCACAGGATCAGATGATGTAAAGATGATTATGGCTAGAACTTTAGCAGAAATGGAGTTAACTGACCACAATAAGGAGTCCTTATTTGGTGGTGGAGTACTGGGTCCACTTCTTCACTTGTTCTCACATAATGATCTTGACGTGAAAACAGTAGCCATCAAAGCTCTTAAGAATCTATCTAGTTTAAAGAAAAATGGACTAGAAATGATTAGACAAGGGGCTGCAAGGCCATTACTTGACCTCCTTTTTCAACACAGCATACAAACCTCAAGTGTGTGGCAAGATGTAGCAGGCATAATTATGCAACTTGCTGCATCAACTATCTCTCAAGATGCTCAAACATCAGTTTTATTGCTAGAATCTGATGATGATGTTTTTAGGCTTTTCTCTTTAATCAGTGTGACACAGCCTGGTGTGCAGCAAAACATTATCCAGACCTTTTACGCCTTGTGTCAGTCGCCCTCGTCTTCTTATATCAGGACCAAGCTAAATGAGTGCTCGGCTATACCAGAATTGGTTAGGTTGTGTGAGAATGAAAATCTAAACCTAAGAGCAAGTGCTGTGAACTTATTTTCTTGCTTGGTAGAGAGTTGTGAAGAAGCCATCATAGTAGAGAATGTTGATCAGAAATGCATCAAGACCTTACTTCAGATCCTAGAATCTTCATCTGATGAAGAGGAAATGATTTCTGCTATGGGAATAATTTGCTATCTTCCTGAAAATCAACAGATAACTCAATGGATTATGGATGCTGGTGTACTGTCAATCATTTATAGATATGTCCAAGAGGGGAGAGAAAGTGATCTTCAAAGGAGTAAATTAATAGAGAGAGCCATTGGTGCTCTATGTCGTTTTACAGTTCCAACAAACTTGAAGTGTCAACAACGTGCAGCTGAAACTGGAATCATAACTGTTTTAGTGCAGTTGCTTGAAAGTGGAACCACCTTGACAAAACAAAATGCGGCACTGTGTCTTGCGCAATTTTCCAAAAATTCGCTTAGGCTCAGCAGACCGATACCAAAACGTAAAGGACTATGTTGCTTCTTAGCTCCAACAGAAATTGGCTGCAGAGTTCATGGAGGAATATGCACAGTGAAATCATCATTTTGCCTTTTGGAGGCTGATGCAGTGGGACCACTAACAAGGGCACTAGGGGAATCTGATCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTATCAACATTAATTGAAGGTGAAAGACTAGAGAGGGGTAGTAAAGTGCTTGCAGAAGCAAAAGCAATACCAATAATAATAAAATTTCTTGGTTCTCCTTCACATGGGTTGCTAGAGAAGTCTCTAAATGCTTTGGAAAGGATTTTTCAGTTAATGGAGTTTAAACAAATGTATGGAGCTTCAGCTCAAATGCCTCTAGTTGATTTAACTCAGCGCGGTAATGGCAGTGTTAGATCCATGTCAGCTAGAATATTGGCACATTTGAATGTACTTCATGATCAATCTTCATATTTCTAA

Protein:

>Am01G005980.1
MLSDLGIWKLIRLVLLINGKKRDYISFTELCCKMMVVDLFTSGPTTTAISQIIDTIGEFLIHASDVLVKKDSFKELGAYMERITPILKELRKEIDRDSETFNRAIEVMNRETKDAKLLAIECSKKSKVYLLMNCRSIVKRLENHTKELSKALGLLPLATTGLSLGIRDEIEKLCDDMKEAGFKAAVAEEEILAKIESGIRENNVDRFYANNLLTLIAEAVGITNEKSTMKMELEEFKKEIENARIRKELAEAIQMDQIIAFLERTDVTSSPRERKLKYFAKRQSLGSQILEPLQSFYCPITHEVMVDPVETSSGQTFEKSAIEKWFLEGNQLCPLTLIPLDTSVLRPNKTLRQSIEEWKDRNTMITIATLKDKIQSSDDDRVLDGLGSLQDLCEQRDQHKEWVMLEDYIVVLIQILGSKNRDIRNRALVILCILAKDNEEAKERIVTVDNAIELIVHSLGRRPAERKLAVALLLELSKYDLAREHIGKAQGCILLLVTMSSGDDNEAARDATELLENLSYSDQNVMQMAKANYFKHLLQHLSTGSDDVKMIMARTLAEMELTDHNKESLFGGGVLGPLLHLFSHNDLDVKTVAIKALKNLSSLKKNGLEMIRQGAARPLLDLLFQHSIQTSSVWQDVAGIIMQLAASTISQDAQTSVLLLESDDDVFRLFSLISVTQPGVQQNIIQTFYALCQSPSSSYIRTKLNECSAIPELVRLCENENLNLRASAVNLFSCLVESCEEAIIVENVDQKCIKTLLQILESSSDEEEMISAMGIICYLPENQQITQWIMDAGVLSIIYRYVQEGRESDLQRSKLIERAIGALCRFTVPTNLKCQQRAAETGIITVLVQLLESGTTLTKQNAALCLAQFSKNSLRLSRPIPKRKGLCCFLAPTEIGCRVHGGICTVKSSFCLLEADAVGPLTRALGESDPGVCEASLDALSTLIEGERLERGSKVLAEAKAIPIIIKFLGSPSHGLLEKSLNALERIFQLMEFKQMYGASAQMPLVDLTQRGNGSVRSMSARILAHLNVLHDQSSYF*

Promoter(3k):

>AM01G005980.1
TGGAAATAAGGGAAGGAAGTTCTGGGGCTGTAGAGATTTCGTGGTAAGATTTATGGTAGTTGGTTCAAGTATTTCCCCATTGTTGAAGTTCTGAGCACATCTGTGTTGCAGATCTGGTTTTTCTCTTGAAGAACTATTTGTTTCAATTTGGTCCTCAATGTTTATGCTTTGTTTCATTTTGGCCCTCAATGTTTATGCTTAGTTTCAGCTCTGTCCCTCTGTTTTTTTGGAAAAATTCTCAATTTTGTATTTGATGTATGTATGTTTGTTTGGTTGGACAGAGTAAAGAGGATCCTTCTGGTTGCGCATTTATGAAGTGGACTGCAGAGGACCAAATTGAACAGTTTTGGGCTTTGTGAACAGTTTCGGGTTGAGGAGTATTTTGGGCTTTGTGAACAGTTTCGGGTTGAGGAGTATTTTGGGCTTTGGGTACATTATGGGATTTTAAAGAGGATCTCAAATGTGGGGCAGGCTCATTAAGTTGGGGCCCAATAGGTATATCAGGCAAGTCAACATATTCAGGTTGAGATATGGGGTGGAGTATGTACATGTGTACACATCCATTAGTTTCAGCCCATTTGGACATTTCCAAGGCTCCATGGTCATTTTCAAGCAATTTTTTTACACCATTAATGTCGTACCAAATTCCAACCCACTCAATATACCCCAACTCCTTGAGAATGCCTATCACTTCAAAATAGGACCACTTATTAGGATCAAGCTGCCAACTAGTCAATTTCCCTACATAGTTGGTCATCCCTTCATCCACAAAATGTCCCTCATGGTGAAATTGAACATTAAGTGTTTCCATTTTGCTGTTACAAAGAATAAACAATAATCAGGACAACAAAACAGGACCACAATAAACAACACTAAACAACACTAAACCCAAAACAGGACAACAATAAACAACACTAAACAACACTAAACCCAAAACAGGACCACAAAACAGGACCACAAAACAGGACCACAAAACTTTACCACAATAAACAAACAATAGTTAAAGGGAGCATTTCGCGCCATTTTCCAGTAACATTGACAAACAACAACACGAAATTTTTGAAAGAACAGTAAAAGGGAGCGATTTCGCAGCATTTCGAGAATTTCTTACCTTCAACCATGGAGTTTCTGGATGATTGAAGATATTCTTGCTTCCCAATGAGCGATTCTTGCTTCTAATAACTTGATTACCCTTCGATTTGGCTTTTGGAACCTAAACCCTACTTCTTCGCTTCGTTGTCTCTTCGCTTCGTTGTCTCTTCGCTTCGTTCTCTGGGTTTCTCACATTCTTCGCTTCGCTTCCTTTCCTTTTCTTTCTTTAATTTTTGTTCACACTTCAGCTCAGAATGTGGTTTCAATTTTTGTTGTGATTTGTGTTTTCTGTCTTTGTGTTTTAATGTTTTAAGTTTATTTATATTTTATAATTGTAAAAAAATTTTAAAAACAAAATTTATGATGTGTTATTTTGATTTGATTTAAATAATAGGTTTTTTTGCCATGTCAATTAATGAGTCCACGTCAGCTGGACGCCACGTCAGCAGTTAACTGCCAGCGTGGCGTCCGTTAGAAATAACTAACGGCAGGGGCCAAAATGACACACAAAAAAAACATGAGGGTCTAAAAGGAGACAAAAAAAAAGATAAAGGGCCAAAGTGACCACAACCCCAAAGATAAAGGGTCAAAATAGCAATTTAGCCTAAAAGAAAAATAGGGTTAAATATGTCTGTGGTTCCTATAAAATTTGAGTTTTTTGTTTTTAGTCATTCAAATTTTTTTACCTACTTTTGGTTTCTACGTTTTATTTTTTCATCAGTTCTAGTCTCTCATGACTTTTAATAAAGCGTGATGATTTTTAATAGTGTTTTTTGAACTTTTATTAGCACTATTAAAAGCCACGAGGGACTAAAACGGATGAAAAAATAGAACTTGGAGACGGACAGTATAGGTGAATTTTTTTTTAGAGACTAAAACCAAATAACTTAACTTGAGTCTATTTATTTACGCGGGCAAGAGAATGTATCTTTTATTAATCAATTTGATCATTACATATACCATAAGAAGAAACACTCAAAATGGCGCATGCGTATCATACGTGTTCTAAGGGTGGTTCGCAATCAACTGCTTCTTGAAGCTACTTTTTTTGGAATGTGAGGGATTTAAAGATTAAATCCACTAGAAATGTTCTTAAAGATTTGTATAGATCTCATAATCATAATCACGATTTTCATGGGTTTTAGTTTTATGTCCCCCATGTATTTTTTTGTATCTTTTTCTTTTATTGAATAACATTTTTTAATATATCGTTGGGATACCATTTGCTTTTGCACCTGAATTTGGCTTTTAAAAGTAAAAACTCAGAACCCAAAAGACAAGACATTCTCATTTTTCTTTTTGAAGGTTGCACATAAACGTTTATTTTAGGCATTGTTTATGGAAGTGGTCCAAGTTTTGTTTTAGTTTTCAACTAACTCATTATACAAATTATGTACTTGTATTCATATTTTAAAAAAAAATCTAATCACCGACTTATAAACTAGGACAAAAAGAAAGTGTGACAAAATTTATTGGTTCGTTATCAGGTTGATAAATATTCATCATCATTGGACATGGATTTGCTGACATCACATTCATTATCAGGTTGATATATATCCTTTGAACTTTCAAAACAATAATTGTTAACGTGTTACTACCTAGTACCTACCAGCCAGGTCAAAGTCTCCAAGACAAAAATGAATGGGATGGAAAATTCCTCTATATAATACAAGGAAAAATAAAAGCACTTTGAAATTGTATCTTCTTTCTTTCTTTCTTTCTTGAAAATTGAATGATATAAAGCTTTCAGGTATGTGCTGGCATCTCTGACTTTCATTGCTTCATTCCATTGTTTCATTCTTCCACAGGTATTTGTTGACTTTAAGTCTTCCCTTGTGATTATAATTTATTATCATCAGAAAAGTGATTGGAAAATGAAACCCTCTTAAACTCTTTTTTGTGTGTTAT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04564.18	U-box	296	362	1.10E-17
PF19584.2	MCAfunc	64	182	2.40E-07

Gene family

Gene family	Subfamily
Ubiquitin Family	U-box

Gene Ontology

GO term	Description	Category
GO:0016567	protein ubiquitination	Biological Process
GO:0031672	A band	Cellular Component
GO:0030018	Z disc	Cellular Component
GO:0007166	cell surface receptor signaling pathway	Biological Process
GO:0016874	ligase activity	Molecular Function

InterPro

InterPro term	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR003613	U-box domain
IPR045210	PUB protein, U-box domain, plant
IPR016024	Armadillo-type fold
IPR011989	Armadillo-like helical
IPR000225	Armadillo
IPR036537	Adaptor protein Cbl, N-terminal domain superfamily

trEMBL

trEMBL term	Description
A0A2K3NVI1	_

SwissProt

SwissProt term	Description
PUB44_ARATH	U-box domain-containing protein 44

KEGG

KO	Description	Enzyme
K08332	vacuolar protein 8

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G20780	senescence-associated E3 ubiquitin ligase 1
Medicago sativa L.	MsG0880042965.01.T01	_
Oryza sativa L.	LOC_Os01g72000.1	armadillo repeat-containing protein, putative, expressed
Cucumis sativus L.	Csa010599	_
Glycyrrhiza uralensis Fisch.	Glyur000211s00017633.1	_
Codonopsis lanceolata	Cl_chr07_07570T	_
Arachis hypogaea L.	AH06G09770.2	U-box domain-containing protein 43 like

Expression pattern