Gene detail

Detail information of Am01G005690.1 Annotation

Gene ID	Annotation
Am01G005690.1	transducin family protein / WD-40 repeat family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G005690.1	mRNA	Chr01	20145980	20157896	-

Sequences

CDS:

>Am01G005690.1
ATGTCTTTTAATCAGCAAGGAGATCTTCTTTTAGCTGGTTATGGTGATGGTCATGTTACCATTTGGGATGTACAGAAAGGAGTAGTGGTGAAAGTTATTAGTGGAGAGCATACGGCACCAGTAGTGCATGCCTTTTTTCTAGCACAGGATCCTCAAAATACTCGACAATTTAAAGCAGTTACCGGTGATTGTAAGGGTCTGGTTCTCTTACACAGTATCTCAGTGGTCGTTTTGATTAATAGATTCAACATCAAAACCCTGTGTCTTCTTGATGGGCAAAGAACGGGCTTGATGCTATCCGCTTCACCCCTCCTTTCTGATGAATTTAGTGGAAGTGCCTCACCTTATTCTCAGGGAAACACCATGGTCTCAACCAGCAGTATAAGTAGCATGATGGGAGGTGTTGTTGGTGGAGATGCAGGTTGGAAACTCTTCAATGAAGGCTCTTCTCTAGTTGAAGAAGGTGTGGTTGTATTTGTCACTCATCAAACTGCTTTGGTGGCACGGCTGAGTCCTTTGGAAGTCTATGCTCAACTCCCTAGGCCAGATGGAATTCGGGAGGGTTCTATGCCATATACTGCATGGAAATACATGGCACAAACTTCCAGTTCTTCTGAAGCTGTTGAAAGAGTTTCATTGCTTGCAATTGCTTGGGAACGGAAAGTTCAGGTTGCAAAATTGGTCAAATCAGAATTAAAAGTATATGGAAAATGGTCTCTTGACAGTGCAGCTATAGGTCTGGCATGGTTGGATGATCAGATGCTGGTAGTTCTCTGTTCAACTGGACAACTGAATCTATTTGCCAAAGATGGAACTGTAATTCACCAAACAAGTTTTGCTGTGGATGGTATTGGAGGAGATGACCTACTTTCTTATCATACTCACTTCATCAATATATTTGGGAACCCTGAGAAAGCTTTTCATAACTCGGTTGCTGTAAGAGGAGCTTCTATTTATATTCTTGGTCCAACGCATCTTGTTGTTTCTCGTCTTCTCCCTTGGAAGGAGCGTATCTTGGTTTTGCGGAAATCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGACTCTTTACGATGGCCATGCCCATGGGGTTGTTGATCTACCTAGAACCTTGGATGCTGTACATGAGGCCATAATGCCCTTCTTGGAGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCCTATATTTCAGTGGCTTTCTGCAGCCAAATTGGAAAACTAGATCAATCCAATGATTTAAATAATAGAAGCAATTCAGTGCATTCTGAGATTAAGGAGCAATACACCCGTGTTGGAGGAGTTGCTGTTGAATTTTGTTGTCATATCAAACGGACTGACATCCTTTTTGATAAAATTTTCGCCAAGTTCATGGATGTTCAGGTTCAACAGAGAGAAACATTTTTGGAGCTTCTGGAGCCATATATTCTGAAGGACATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTGGTAGAGTATTATAGCACCAAAGGGTGGCTACAGCGGGTTGAGCAATGTGTACTTCACATGGATATTTCATCCTTGGATTTTAATCAGGTTGTCAGATTATGCCGAGAGCATGGACTGCATAGTGCCCTGGTATATCTTTTTAATAAAGGATTAGATGATTTTAGGGCACCTCTGGAGGAGCTCTTTGCAGTCCTACAAAAAAGCCAAAAGGAAAATGCTACTGCACTTGGGTATAGAATGCTGGTTTATCTCAAGTACTGCTTTACAGGTCTTGCCTTTCCACCAGGCCGTGGAACTATTCCTCCTACACGCTTGCAATCTCTTAGAAAAGAACTTGTCGAGTTTTTGTTAGAGGATTCCAGTGCTCTGAAATCCCGGAGAGTTTCAGATGCTGTGTCCAGACGGCCATACCTGAATCTATATCTTCTCTTAGAGTTAGACACTGAAGCTACATTGGATGTCCTCAGATGTGCTTTCATGGAAGATGAAATTTCAAATGCTCGCTCATCTTCACTGGATTCAGCCGATAGACCCATTGAAGAAGCAACAAAAGAAAATGATAATGTCACTGAAACTCTTAATACTTTGGTTCAGAATACGGTTGATGCACTCATTCAAATAATTGATATGAATGTTGTTCCAACAGATACAACCTCTAGTAGTGTTGATGATGGATTGACAAAAGAGTGGCCTTTGAAGGACATAGGTCATCTGTTTGAGTTCATTGCATATTATGTTTCTCTCCAAAGAGCTAAACTTTCAAAGGGTGTGCTGTCTCAAATATTGGAGTATTTGACATCGGATAGTAACTTTTCAACTAATGTTTCTGCTCATAGTTCAACTCCAAAAAATAGAGAGAAGCAGGTGCTTGCACTTCTGGAAGTAGTTCCTGAGTCAGACTGGGATGCATCATTTGTGCTAGACCTATGTGAGAAATCCAAATATCACCAGGTTTGTGGATTGATTCATTCCATCAGACATGAGTATGTGGCTGCATTGGATAGTTATATGAAAGATGTAGATGAGCCTGTTCATACCTTCTCCTTTATCAACAAAGCATTCTCACAGTTCACTGACAATGACCATGCTGCTATTCGATCAGCAGTCATATCACGAATTCCTGAGCTGGTTGAACTAAGCAGGGAAGGTGCATTCCATATGGTTATCAGTCATTTTAGTGATGAAAGTTCCCGTATCATCACCGAACTTCATTCTCATCCAAAAAGTCTTTTCCTTTATTTAAAGACACTCATTGAACTTCACTTATTCGGCACCCTAGACTTGTCTAATTTGAGAAAGGATGATATTATGAATCTTCCTAATGGAAAGCAGGTTAAGGATCCCCAACAAGGAGTCCGTGATTACTTAGAAAATATATCCAATTTCCCCAAGTACATGCGTGAGAATCCTCTTAATGTGCCTGATGATCTTATTGAGCTTTACCTAGAGCTGTTATGTCAGTATGAACGAGGTTCAGTTCTCAAGTTTCTGGAAATGTTTGATAGCTATCGAGTGGAACATTGTTTACGACTGTGCCAAGAATATGGCATTGTAGATGCTGCCGCGTTCTTATTAGAAAGGGTTGGTGATGTTGGTAGTGCTCTTTTGCTTACACTTTCTGATCTGAATGGTAAATTTGTTGAGCTTGATGCTGCTGTGGAAGCTGTAGTTTTGAACCATCCTAAGGTCGGTTCCTCCCACATGAAAGTATTCAACACTGTTTTAAGAACAAAAGAGGTGAATGAACTTCAGAATTTATTGCATGCCTGTATTGGTCTGTGTCAACGGAACACCCCTCGTCTAAATCCTGAGGAGTCAGAGGCACATTGGTTTAAGTTACTTGACTCGTTTTGTGACCCATTGATAGATTCATACGTTGAAGAGAGAACAAATGAAAGAAAAAATTATTTTGGTGTGCTATCTGGCTTAGCAGATTCACAACTGGACAAAGACACCTATAACAGCAGTTGGAAAATTTCGAAGTCCAGGAATGGTCATATCTTGAGAAAATTGCTATCCCAGTTTGTTAAAGAGATTGTTGAGGGAATGATAGGTTTTGTTCACCTTCCAGCTATCATGTCCAAACTCTTGTCTGATAATGGTAGTCAAGAATTTGGGTATTTCAAACATACCATATTGGGTATGCTGGGAATATATGGCTTTGAAAGAAGAATTCTGGATGCTGCCAAATCCTTGATAGAGGATGATACATTTTATACCATGAGCTTACTCAAGAAAGGGGCCTCTCATGGATTCGCTCCCAGGAATTCAGTGTGCTGTATTTGTAATTGCCTCCTTACAAAGAATTCGGTTACCTCTGGAATTCGAATTTTCAACTGTGGCCATGCAATTCATCTCCAATGCGAAGGCTCAGATGTCGAGTCATCAAGTAAAGGATCTTCATCTGGATGCCCTGTATGTCTGCCGAACCAGAAATCCCAAAAATCTAGAAACAAATCAATCATTACAGAGAATGGCCTGGTCAATAATAAATTCTCATCAAAACGCCAATACCCTCATGGAAGTGTCATTCATCCGCATGACAGTGATTTATCAGAGAATATGTATGGACAGCAACAGATATCACGGTTTGAGATCTTGAGCAGCTTGCAGAAAAATCAGAGATTTATGCAAATAGAAAACTTGCCTCCATTGAGGCTTGCTCCACCTGCTGTGTACCATGAAAAGGTAAGTAAAGTGCAACACTATCTGACCGGCGAAAGTAGCAGTAGTTCCACAGTTATAGAGAAACAAAGTAGACACAAGCAGAACCGGGAGTTGAGAGTTAAAGGTTCATCAATTCGTTTTCCTTTGAAATCGAGTATATTTGGCAAAGAAAAGACAAATAAGCGGTGA

Protein:

>Am01G005690.1
MSFNQQGDLLLAGYGDGHVTIWDVQKGVVVKVISGEHTAPVVHAFFLAQDPQNTRQFKAVTGDCKGLVLLHSISVVVLINRFNIKTLCLLDGQRTGLMLSASPLLSDEFSGSASPYSQGNTMVSTSSISSMMGGVVGGDAGWKLFNEGSSLVEEGVVVFVTHQTALVARLSPLEVYAQLPRPDGIREGSMPYTAWKYMAQTSSSSEAVERVSLLAIAWERKVQVAKLVKSELKVYGKWSLDSAAIGLAWLDDQMLVVLCSTGQLNLFAKDGTVIHQTSFAVDGIGGDDLLSYHTHFINIFGNPEKAFHNSVAVRGASIYILGPTHLVVSRLLPWKERILVLRKSGDWMGALNMAMTLYDGHAHGVVDLPRTLDAVHEAIMPFLEELLTSYVDEVFSYISVAFCSQIGKLDQSNDLNNRSNSVHSEIKEQYTRVGGVAVEFCCHIKRTDILFDKIFAKFMDVQVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLHSALVYLFNKGLDDFRAPLEELFAVLQKSQKENATALGYRMLVYLKYCFTGLAFPPGRGTIPPTRLQSLRKELVEFLLEDSSALKSRRVSDAVSRRPYLNLYLLLELDTEATLDVLRCAFMEDEISNARSSSLDSADRPIEEATKENDNVTETLNTLVQNTVDALIQIIDMNVVPTDTTSSSVDDGLTKEWPLKDIGHLFEFIAYYVSLQRAKLSKGVLSQILEYLTSDSNFSTNVSAHSSTPKNREKQVLALLEVVPESDWDASFVLDLCEKSKYHQVCGLIHSIRHEYVAALDSYMKDVDEPVHTFSFINKAFSQFTDNDHAAIRSAVISRIPELVELSREGAFHMVISHFSDESSRIITELHSHPKSLFLYLKTLIELHLFGTLDLSNLRKDDIMNLPNGKQVKDPQQGVRDYLENISNFPKYMRENPLNVPDDLIELYLELLCQYERGSVLKFLEMFDSYRVEHCLRLCQEYGIVDAAAFLLERVGDVGSALLLTLSDLNGKFVELDAAVEAVVLNHPKVGSSHMKVFNTVLRTKEVNELQNLLHACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLIDSYVEERTNERKNYFGVLSGLADSQLDKDTYNSSWKISKSRNGHILRKLLSQFVKEIVEGMIGFVHLPAIMSKLLSDNGSQEFGYFKHTILGMLGIYGFERRILDAAKSLIEDDTFYTMSLLKKGASHGFAPRNSVCCICNCLLTKNSVTSGIRIFNCGHAIHLQCEGSDVESSSKGSSSGCPVCLPNQKSQKSRNKSIITENGLVNNKFSSKRQYPHGSVIHPHDSDLSENMYGQQQISRFEILSSLQKNQRFMQIENLPPLRLAPPAVYHEKVSKVQHYLTGESSSSSTVIEKQSRHKQNRELRVKGSSIRFPLKSSIFGKEKTNKR*

Promoter(3k):

>AM01G005690.1
AGTTCGTGAAAATGCTATAAGGGGTAGGCCAATAAGTCCCTACCAACGAGGATTAGTTGTTGGAAGATTCAAAAGGCCTAGGCAAACATAAGACCTTACCGACGAGCAGGAAATGTAACCCAAGCTATGTAAATCGTAAGACCTTAATAAAAGGGACAGGGCGATATAAGACTCGATAAATAAGCAAAGCATTCATGTTCGACGTGAAGTTTCTAGAAAGAGGGGAAGATGACTGCTTTTTTGATCCAACGAAGAAAGGAACCATGTTTGGCGGTAGTGGCAGAGCTAACTAGTTTTTATGAGGGAGCCAAGTATAAAGAGAAATCTTTGTATAGGCAAAATAAACTTCATAAAAAGAGAACTAAAAGTGATTTTTTTTATCAGCTAAAAATGATAAGAGTATAGATACAAAAAATAATTAAAGAAAATTGTAAACACTAGATTTATGCATTACAACATGCCAAAACAAAAGTGAAAAAATAAAACAATGATAAACTTAAAACATATCCAAATTATATTATGCAAAAAAAAAGAACAACCAAATTATATCAAATTCACATTTCTATAAGATGAAAGACTCTTAAAATAAATAATTATGATAGAAAAGACATGAAAGATTAGCTAAATAGTAAAGGATAATAAGACATTATTGAACTATGGGTAGCAACGACTTATTATTATTATAACTACAGGTAGGGATAATAGACTTATCATTATACTTAGTTTTAACTTTTTATTTTATTTTTTGAATAGCAAGAGAGAATGATCATTTAACAAAGATAAACTAATGCTGTTAAAAACGTGAAAAAAAAATACAATAATATAAGTTATAAGTTCAAAAACTATTGGAACTATGCTATAATTTTATTTTATCTTAGAGATGAATATTTTTTTTTACTGAATCTTAGAGATGAGGTTAAAACCTGAAGTTTAAACTCAGATAAAACCCAAGTATTGACGATTTTTTTTGAAGTTTTTAGTTAACATTTGTTTGCCTTCAACTGCAAGCACATCACAGCACACTCCACAGCTAAACTGAATTAACAACTTCCATCCATTCCATGGAACTCGACCTCCGTTCCTTCCTTCCCTCACTCGCCGACGCCGACGATGCCGACGACGACACTCCTCACCGTACAATCGACGAAATTCTCAACGACTGCGACACATCCTCATCTTCATCATCACCCTCTCCTCCTTCCTCTCCCTCTCATCTCCTCCAAACCAAACCCACCCACTTTCCCCAACCCGTTTCCACTTCCCGGGTTAAATTAACCGAATCCACTGACCCGGTCCGACCTCCACGCCCTTTCTCCTCTCTCTTAGGTCGTGTTAGACCTAATGCAAAGCCTGGCGCAGCTCTTGCTGCTGCCGCGGCTGCTTCCAGATCCGTCCCGACGCCGCATGCGGCGGCGATTATGTCCCGGAGGAAAATTGCGGCTTTGAATAGAACCGATTCGGGTTCAATTGCTGCTTCTGGTGATGATGATATTTCCGATGTTTCTTCTAAAAGTGGTGAATTGGAAGGAAAACTGGACTCCTTAGAAAGGAAATTGGAGAGTTTTGATGATAAGGTTGGGGGTAGTGAGAGTGTTTCTTCTGTTGATGCAGAGATTGTTGTTACTGAAGTGGATGAGTTGAAGAAGAAAGATGATAGTGCCGATGTTCAGGTGAGGAATGATTCTTCTATTGTTGGTGAGAAGAGAGATTTAGATGAATGTTCTGTTAGTCCCTCATTGAATGAGGTTGAAAATGGCCATGATCTTGAGGTTGGTGTGAATTCTTCAACGTTTGATGGTGATCATGGTTTTGGTGAAAAAACTAGTCTTTGTAATGTTGATGTTGGTGATGATGGTTTTAGTGAAAAAACTAGTCTTTATAATGTTGATGATGATGATAAGGGAATTATTACTGAAACAGAAGCATTAGTGAATGATGATGGTGATGCTGTGGAAGGTATTACGAATGAGGTGACTGATGGCGGAGGTGGGGATGATGGTAGTTCAATAGGTGATGTTTCTGAACTAGTGGAGGAGAAACTTGAGGAATTGGAAAGTAAAATGGCTGCTAATAGTGCAGAGGAAAAACTAGAGTCTCCAAAGAAGCCACTTGATGTGGCCGAGGAATTGGAGAAGAAGAATGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCTGCTGCACAGCCAATGAGGCTTGAGGGTGTTCGAAGAGGGTCCATTACATTGGGATATTTTGATGTTGAAGCTGATAATGCTGTAACAAGAGTCATTTCATCGCAAAACTTCAGGCGTGAGCACGGTTCTGCTCAAGTCTTGGCTGTTCATGCTAATTACATTGCAGTGGGAATGACAAAAGGACTCATTGTTGTAGTGCCTAGTAAATATTCCATTCATCACGCGGACAACAATGATGGAAAGGTTCTTTCCTGATTTGATCAAACTTTTCAAATTAGAGTCAATGTTGGTTGAGTTATGGAAATTTCTTTCTTTGCCTGTGAATACACCTCATGTGGAATTAATATAATATTATGGTTACTGCTATCTTTTAACTTCCTAAACTTTCCTATTAGATTTTGCATGAAAGCATATTTTATCAAATTTTGTACGGAATATCGTAGTTGCTTGACACAATGAATGAGAATCCCAATATAGCAATGCAAATGGCTTTCATTTCAGATTAAAAAAATCGAGAATAGTAAATCAATGAAAAAACCATCTTAGAAAATAAAATCTGCTCAAAATTCCGTATACACGCATTATTAGTGGTGCAGCACTGACGTTCTTTAAATAATCATTTGTCCATATATATATATATATATATATATATATATATATATATATATAAATTGGTAATTGGTAATGCTAGTGCTTTTTACTTTCAAGCATTTATTTGATTGAGTTTTGGTATCAGTTGTAGTTTCATTTATCATGTATACCATTCACTTGTTAGATGTTGATGCTAGCTGTACAAGGTGATCGATCACATGCTCCAGTGACGTCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF12816.10	Vps8	468	652	2.20E-56
PF00637.23	Clathrin	970	1033	1.00E-13

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005770	late endosome	Cellular Component
GO:0003723	RNA binding	Molecular Function
GO:0034058	endosomal vesicle fusion	Biological Process
GO:0009555	pollen development	Biological Process
GO:0006086	acetyl-CoA biosynthetic process from pyruvate	Biological Process

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR019775	WD40 repeat, conserved site
IPR001680	WD40 repeat
IPR045111	Vacuolar protein sorting-associated protein Vps41/Vps8
IPR025941	Vacuolar protein sorting-associated protein 8, central domain
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat

trEMBL

trEMBL term	Description
A0A1S2Z4G7	_

SwissProt

SwissProt term	Description
VPS8_MOUSE	Vacuolar protein sorting-associated protein 8 homolog

KEGG

KO	Description	Enzyme
K20178	vacuolar protein sorting-associated protein 8

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G00800	transducin family protein / WD-40 repeat family protein
Medicago sativa L.	MsG0880042894.01.T01	_
Oryza sativa L.	LOC_Os02g03220.1	protein binding protein, putative, expressed
Cucumis sativus L.	Csa000397	_
Glycyrrhiza uralensis Fisch.	Glyur000072s00008107.1	_
Codonopsis lanceolata	Cl_chr07_07940T	_
Arachis hypogaea L.	AH02G04310.2	Vacuolar protein sorting-associated protein 8 homolog like

Expression pattern