Gene detail

Detail information of Am01G005430.1 Annotation

Gene ID	Annotation
Am01G005430.1	hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G005430.1	mRNA	Chr01	18727157	18734159	-

Sequences

CDS:

>Am01G005430.1
ATGGGAGGTGGTGTGTTAAATTGGAAGCAGAAGAAGAAGAATAAGAATGCAAAATCTGGTGGTTTTGAATCACTGGGTCTTAATCCTAATGTATTCAGGGGAATCAAGCGCAAAGGGTATAAAGTGCCCACTCCAATTCAGAGGAAGACCATGCCAACCATCCTTTCTGGCGCCGACGTCGTTGCGATGGCTCGTACCGGCTCTGGCAAAACGGCTGCGTTTCTTGTCCCCATGCTCCACCGCCTCAACCAGCATCTTCCTCAGGGTGGTGTTAGAGCCCTCATTTTATCCCCAACAAGGGACTTGGCACTTCAGACTCTCAAGTTCACCAAAGAGCTAGGCCGCTTCACAGACCTTCGTATTAGTTGTCTTGTTGGTGGTGATAGTATGGAAACTCAGTTTGAGGAATTAGCACAGAGTCCTGACATTATAATTGCCACTCCGGGTAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCCTTGCGCACGGTTGAGTATGTTGTTTTTGACGAAGCTGATTGTTTATTCGGCATGGGTTTTGCTGAGCAGCTCCACAAAATTCTTGCCCAGCTTAGTGAGAATCGTCAGACATTGCTTTTCAGTGCTACTTTACCCAGTGCACTTGCAGAATTTGCCAAGGCCGGTCTGCGAGACCCTCGCCTCGTCCGCCTTGATTTGGAAACTAGAATTAGCCCTGACTTGAAGCTTTCCTTTTTCACTTTGAGGCAGGAAGAGAAGTGTGCCGCATTGCTCTATTTGATCAGGGAGCACATTGGTTCTGATGAGCAGACATTAATTTTTGTTTCAACAAAGCATCATGTCGAGTTTCTCAATTCCTTGTTTCGAGAAGAGGGTATCGAGCCGTCTGTGTGCTATGGTGACATGGATGCAGATGCTCGCAAGATCCATGTATCTAGGTTTAGAGCAAGAAGGACAATGTTGTTGATTGTCACTGACATTGCCGCTCGAGGCATTGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTTCCTCCCAAGCCTAAAATATTTGTTCATCGAGTTGGTAGGGCTGCAAGGGCTGGTCGGACTGGTACCGCCTATTCTTTCTTGACGACGGAGGATATGGCTTACCTCTTGGACCTTCATTTGTTTCTCTCTAAACCAGTCAGAGCTGCTCCCACTGAAGAAGAGGTCTTGCAGGATATAGACGGAGTAAGGTCAAGAATTGACCAGGCAATGGCAAATGGAGAAACCATTTATGGTCGTTTCCCCCAAAAAGTCATTGACCTTGTTTCTGATAGAGTTAGGGAAATTATTGATACTTCTGCGGAACTACAATCATTGCAGAAAACCTGTACAAATGCATTTCGTTTATATTCAAAAACAAAACCTTTACCCTCAAAGGAGTCCATTAGAAGAGTAAAGGATCTACCCCGTGAAGGTCTGCATCCGATTTTCAACAATGTGTTGGAAACAGGGGAGTTGATGGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACCGTTTTGGAAACGGAAGGGGAAGCAGCCAAATCAAAGCATTCAGTGGGTCCTTCTGGCAAATGGGTTGATGTGATGAAAAGGAAAAGAGCCATTCATGAAAATATTATAAATTTGGTTCATGAACAACAACATTCTAAGAGCAATACGGAAAAGGAGGAAGATGAATCGCAAATTACTTCTTCAATGGAGAAAGGGAGAAAAGCAAAACGTGGTTCTAAGAGAAAGCCACAAACCTTCAAGGATGAGGATTACTATATAAGTTCCATACCTAAAAATCAGCACATGGAGGCAGGCCTTTCGGTAAAAGCTAATGAAGGCTTTTCTTCAAATAGATTGGAAGCAGCTGTCCTAGATCTAGTTGCAGATGATGGTGCTGGCATGAAGAAACAGAGATCGGTGTATCACTGGGACAAGAGGGGTAAAAAATACATCAAGTTAAACAACGGTGACCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACGAAGGCCACCAAGACTGGTATATATAAGAAGTGGAAGGAACGCTCACACACTAGGATATCTCTTAAAGGGACAAGTACTGATGGTGATGCTCAGGAATCAACAAGTTTTAGAGGATCTTACCAAGGAGGTGGTAGGAATTTTAGAGGCGGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGACAGAATAAAGCCAACAAAATTTCTTATATGAAGAGCAAGTCGCCAAAGGGTAAAAAGTCGGGCAGAAAAGGAAACAAAAGAAAAGCCAAGTAG

Protein:

Promoter(3k):

>AM01G005430.1
TTGAGATTCGCTCTTACCTGTAGGAACCTCGACATCTTTAGCACTAACACGCTTAGCAGTGTTAGAAGATACATGATTTGTTCTTAAGGTTTTCTGGCTTGATGTAGTTTGGGAAGAAGAAGACACATTTTTTGAAGGTACATTAGTTGTTAATTTAGTGTGTGTTGTTGGTTCTTTAAAATCTCGTTGATTTCTTCGACCCACTTGTTGTCTCGTTTCTGGGAACTCCATTACAAATTTGTCAGGATTGTTTCTTAACACATCAAAAACTTTCTTCGCCAGTTCATTTATAACACGAGCCTACAAAACCGAAAAATTATTTCATCAAGGCAAACTTATTGTTGGAGATGACCGAAAAAGAAAAGAATTAAGTACCTGTCTGAAATATATGGTACCCGAAGAATTAAAATCCATCGCATTGTTGAATATTAAAAAAGCATCATGCTGCATAATGGTGAAAAACATTATAACAACTCATGCATTTGCTTCTGATTAAAGAAGGAGACAGTCACATGATCATTAAAAAACCAAACCTCAAATTGTTCTAGAGTCTTATACATCCCCTCGTGTAGTTTGGCCCTCATGGTTCCAAAATCCATAGGCTCTTTAATGATTGCATAATAATCCTCAACCTTGGACAAGAGTGAATTAAAAGAGGAATTACATTACATGTAATATCCACAAGATTGTATGAGAAATTATTAGGACTACACACCTCATTTGGATCAACTGGTTCTGCAAATATTTCATAGGTGTCCCTCCTATATTAATATCATTACATATTAACCACTTGACACAATTAAGGTTTTCAAGTTATGTTATGATACAACAATTATATAAAAGTAATCAATTCAAACACCTCTGTAAAGTATCGAGGAGAAGTTCAAGTATTCGCTTCTTGGGCAAAGAAGTTGATGGCGGTTTTGATGGTTGATCTGTTTACACAAACACACACGTGCGGTAAGTTATGACTGTGATAACATTATACTAAAAATTTATAATTTGAATAAGTCCAAGTTAAGTTAAGCCATTTTATTATACAAACATATATAAAGAACTCGCATACCACTGGCATTTTTCTTTTGAATATCTTCATGTTTCACACCCTGCGTATTGTTTAGATGGCTTATCAATTTTTTTTCTAAGCTAGGCAACATAGAGTCACGAAAATCTTATTAAAAAAAGGAAAAAGAAACAAAAAGGATAATCACGGGGACAAACAAACAAACACCTGATTTGATGAAGTCGCGAGTTGCTGAAGTGGCTTCGATTTTGTCTTCTTTTTGCCCCTATTACGAGGTGCGGGGCTCTGAACATTAATGCAAGAAGCCTCTAATGCTGAAATTCTTGGACTCCTCCTTTGTCCCTCGGCTTTTTTCAATTTCCTGCCACAAAAACAAACTCTAATTTTATCAAGTAAAAGTGAAAATGCACTCTAAATTTAGATTGAACTCGAACTCAAACTCAAACTCAAACCCACCTCAACCTAGTCATTGTACCTCAGCGTGCAATATTATGATGAAAGAAAGGCTTTTTTAAATATATATTGAGGCAGAGAGAGAAACTTTTGAAATATGATGTTTAGTTACTACATTTGGGAGATACCAAAATGCCTAACTAGGTATGAGGTAGCAAAGGTAGAGATATGTGAATTAATTAGTAATGATATGACCATGATTTTGTGATAATGCCACGAGATCAATGATACTTCTTTTTTTCTTTCTAAATAAACGTACAAATAAGTAAAATAACCAAAAGAAGAAAGCATATTGAGACCAATTATTTGTCTTCAAATCATCGACTTGTTGAAGTTAGGCATCATGGATCACATTGCTAAACTTTCCCCTCCTTCTCACTCACAATATTCTTCCTTTGATTTTTACCCTTTGCTCTACATCACATTGTGTTAGTTGGAGACTTGGATACTATTGCTCCACAACTAACTCCATATTTAGGGATCCGGTTTCTGTGCGGTCGGACTGCTTGTGCAGTCAAGCAGTCGGGTAACTGGCGGTACAGATTTCAAAGTCGAATTTTTTATTAAATAAAAAAGAAAAACTGCTATTCAAATCGAAACCATCCGATCTTAATCGGACGACTTCGAAGCAGCCGACTGCTTGAGCAGTCCGACTACATTCAATCCAATTCCCATATTTAGAGTTTATTATGTATAGAGGACAGTTATAAATATGAATGTAATTTATTTTATTTGGTTGGATATATTAATATTATATGATTTTAACATTTATATCTTAATTTTTCTATGTTATGATTTTGAAAATTTGTGAAGTTAGATAATATGACACCTAATATCTTCATTCGCATAAATGATTTGAAACAGATAACATTCTTTTTTTGTCTTTTAATGTATAATGATGATGTAAAATATAAGAATAGTGATTCCAATTCATGGTGCGAATACATTGCTTTACGAAATGTCAGAAAGTGCAGTATCATCCAAGGACCCATCCGTGTTGGGTTTAAAAATGCAGAATCACACTTCTTTTCTTTATATGACATTTCGTACATGAGTCTTTCGTACTAAATATCATCGGTGCTCAAAATATAAACCTTATTCATCAAATCAAATCAAAAAATTAAAATACTATCTTGTCCAGAAAATGATGGTTACTATATATTTGATTTGATGAATAGGGTAGGAGTTAGACGCGGGGGCCCAATAACTATGGGCTGGGCGAATAGAAGTGGCCCATACGCAGTCCACTCGTAAGAGTTCTACTGCTTAGGTCACAACGGAGAGCGGAGGAATTCTAGACTCTTCTTCTCGGTTCCGTCGTTCTCTGCCCTCAATCGTCGACGCCGGTGCTGTTTTCTTCGCCGCGTGATTCTTAAAGGTTTGAGTCACGTGCATATCTTGACACTACAACTTTCTCTTACTATTCTTTTTGTTTTTTTAGTTAGTTTTGCCGCCTCACACACCGTCTGGTTATTTCATTAACAAACAACAGATTTTGTTTGCGAAAGAGACGAGAAGAGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00270.32	DEAD	44	211	2.80E-48
PF00271.34	Helicase_C	248	358	4.00E-24
PF08147.15	DBP10CT	627	688	3.60E-13

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0043232	intracellular non-membrane-bounded organelle	Cellular Component
GO:0005829	cytosol	Cellular Component
GO:0009507	chloroplast	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0016787	hydrolase activity	Molecular Function

InterPro

InterPro term	Description
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR011545	DEAD/DEAH box helicase domain
IPR033517	DDX54/DBP10 family, DEAD-box helicase domain
IPR012541	DBP10, C-terminal

trEMBL

trEMBL term	Description
A0A1S2YJ16	_

SwissProt

SwissProt term	Description
RH29_ARATH	Putative DEAD-box ATP-dependent RNA helicase 29

KEGG

KO	Description	Enzyme
K14808	ATP-dependent RNA helicase DDX54/DBP10	[EC: 5.6.2.7]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G77030	hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases
Medicago sativa L.	MsG0480021943.01.T01	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa010978	_
Glycyrrhiza uralensis Fisch.	Glyur002910s00040633.1	_
Codonopsis lanceolata	Cl_chr02_58800T	_
Arachis hypogaea L.	AH10G30090.1	Putative DEAD-box ATP-dependent RNA helicase 29 like

Expression pattern