Gene detail

Detail information of Am01G004200.1 Annotation

Gene ID	Annotation
Am01G004200.1	vacuolar protein sorting 11

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G004200.1	mRNA	Chr01	14091538	14096861	+

Sequences

CDS:

>Am01G004200.1
ATGTATCAGTGGAGGAAGTTCGAGTTCTTTGAGGAGAAGTACGCAGCAAAATGCACGATTCCGAAAGATGATGATGATGACATCACTGTGAATCGCAATAACGACGAGAAAGAGAAGGAGAGGGAGATCGAGTGCTGTTCTAGCGGGAGAGGCAAAGTGGTCACTGGTTTTGATGACGGCTCCGTTTGCTTTTTCGATCGAGGATTCAAGTTCAATTACGCTTTTCGCCCTCACTCTTCTGTTCTCTTTCTTCAGCAGCTTAAGCAACGCAACTTCCTGGTAACGATTGGGGAAGATGAACAACTTACTCCCCAGCAATCATCTCTGTGCCTCAAGGTTTTTGACCTTGATAAGATGCAATCTGAAAGTTCGAGCACAGCAAGTCCAGACTGTGTTGGGATATTGCGTATATTCACTAATCAGTATCCTGAGGCAAAGATTACATCATTTATGGTCTTAGAAGAAGTGCCCCCTATATTACTCATAGCTATTGGCTTAGACAACGGTTCAATTTACTGCATCAAAGGAGACATTGCACGGGAGCGTATTACCCGTTTCAAGCTTCAGGTGGAGAACCTTTCAGACAAAACTCTTTCTTCTATCACTGGTCTTGGGTTTAGGGTCGACGGTCAATCACTTCAGTTGTTTGCTGTAACTCCAAGTTCGGTGAGCTTGTTCTCATTGCATGATCAACCACCAAGAAGGCAAACCCTTGATCAGATTGGATGTGGCTTAAACAGCGTTGCAATGAGTGATCGCTCTGAGTTAATAGTTGGTCGACCAGAGGCAGTATATTTTTATGAAGTTGATGGACGTGGTCCTTGTTGGGCTTTTGAGGGAGAAAAAAAATTGCTAGGATGGTTTCGTGGATACCTTTTGTGTGTTATTGCAGATCAAAGAACCGGAAAACACACTTTCAATATCTATGATCTGAAGAATCGATTAATAGCCCACAGTGCATTGCTTAAAGAAGTTTCTCATATGCTCTATGAATGGGGTAACATCATACTCATAATGACTGACAAATCGGCTTTATGTATTGGAGAAAAGGATATGGAAAGCAAGTTAGACATGTTATTCAAGAAAAATCTATATACTGTGGCAATTAATCTTGTTCAGACTCAACAAGCAGATGCTGCAGCTACATCTGAAGTGCTAAGAAAATATGGGGATCATCTGTATAGCAAACAAGACTATGATGAGGCAATGGCACAGTACATACATACCATTGGTCATCTTGAACCTTCTTATGTGATACAGAAGTTTTTGGATGCTCAAAGAATCTACAACCTCACAAACTACTTGGAAAAGCTACATGAGAAGGGTCTTGCTTCTAAAGATCACACCACGCTCCTGTTAAACTGTTACACCAAATTGAAAGATGTCGAAAAGTTAAATCTATTTATCAAAAGTGACGACAGCATTGGGGAAATTAAGTTTGATGTGGAAACAGCAATCAGGGTTTGCCGTGCTGCCAATTACCATGAGCATGCAATGTATGTTGCAAAGAAGGCAGGGAGGCATGAATGGTACTTGAAGATCTTACTTGAAGATCTTGGAAGGTACGAAGAGGCATTGGAATATATTTCTAGTCTTGAATCAAGTCAGGCAGGGATGACAATAAAGGAGTATGGTAAAGTTCTAATAGAGCACAAACCATTGGAGACAATTGAGATTCTCATAAGGCTCTGCACAGAGGATGGTGACAAAAGAGGACACTCAAATGGTGTGTATGTGTCTATGTTACCATCTCCTGTTGATTTTCTAAGCATTTTCGTCCATCACCCTCAGTCCCTTATGGAATTTCTTGAAAAATATACAAATAAGGTCAATGACTCACCTGCTCAGGTGGAGATTAATAATACCCTTTTAGAGTTGTATATATCGAATGAACTGAACTTTCCTTCAATGATGCAATTTAATGAGGGTGCAGATTACCTTAATATAGCATCAGCAAAAACTCTGAATTTAAATGCTCAATCCAATGGAAACATTGTTGATCTCAAGAGTTCAGAAAAGGAAAAGGACCGTCTTGGAAGACGTGAAAAGGGTCTACTTATGCTTAAGAGTGCATGGCCTCCAGAGACAGAACACCCACTCTATGATGTTGACCTGGCTATTATACTATGTGAAATGAATGCATTCAAAGATGGGCTTTTGTATTTGTATGAAAAGATGAAACTCTATAAGGAAGTGATTGCTTGCTATATGCAGATGCATGATCATGAGGGATTGATTTCTTGCTGCAAAAGACTGGGTGATTCGGTTAAAGGAGGGGATCCATCTCTTTGGGCGGATGTACTTAAATATTTTGGTGAGCTGGGAGAAGATTGCTCCAAAGAAGTAAAAGAAGTTTTGACTTACATCGAGAGGAATGATATTTTGCCCCCCATAATTGTTCTTCAAACTCTTTCCAGAAATCCTTGCCTCACACTCTCCGTGATCAAGGATTACATTGCTCGAAAGCTTGAGCAGGAATCGAAGATAATTGAGGAGGACCGGCAGGCTATTGACAAATATCAGGAAGACACACATGCAATGAGAAAAGAAATTCAAGATCTGAGGACAAATGCGAGAATTTTTCAGCTTAGCAAGTGCACGGCATGCACTTTCACCCTGGATCTTCCTGCTGTGCACTTCATGTGCATGCACTCATTCCATTTGCGGTGCCTCGGCGATAATGAAAAAGAATGCCCTGAGTGTGCCCCTGAATATCGGTCTGTCTTAGAAATGAAAAGAAATTTGGAGCAAAATTCTAAGAATCAGGACAGTTTCTTTCAGCAGGTGAAGAACTCCAAAGATGGGTTTTCTGTCATCGCTGAGTATTTTGGGAAAGGGATAATCAGCAAAACAAGCAATGGATCCACTTCTGATCTCAGATCTGGAAATGCATCATCCAGCAGTGGTTTCTGA

Protein:

Promoter(3k):

>AM01G004200.1
GCACCCAACATTGAACATTGGTGTTTCGGATCCTGTTTGGATCAAAGTCTGGCGTCCATGCAAATAGCCGTAGAAATCCCGGATGCAACGACCAAGACCCAATGGCTTGAAGGCTTCGCATCTCCTCAAACGATTGAAAACAAAATTCATAGTATCCCTTTCCCAAGGAGACCATTTTCCAAGCGCCTATGGATTTCCATTCTTGCAAAAGTTTTGCTCTGAGATCATTGATTTTTAGAGGAGAATCCCCCTTAGACAAAGTAAGGCGGCCATGCAATACATTCTTGCATTCTTTGACACCTTCTTGATATTCAGTTTCGGTAATCTTAATCGTGACTGCATCGCCTTTGATGCAAGGCTTGGGCAACTGACTTGGAGGATTCACGCATGAGTTTGTGAGCGCAGCAGCAAAGGATTTTGATGTGGATACTGGCTGAGGCTGAACCCGAGGCGCTGCTGCCGGTGCCGTATCGGCCGAGCATGGCCATGGATAGAAAAATGAATGAGACTTATATTGTCTAAATGAATATAGATTTCGACATACCTAGAAAAATGAATGAGACTTATATAGTCTAAATAAAAGCTAAAAGTTTGGGATTTTGAGATCATAAATATATTAAGCCTATATTAGCTAATGTTTTCCTTTTTTTTGGTACAAGAGGGAAAAGAAAAACAAAAAGCAAATCAACAAAAAAAACTATCTAAAGAAGAGAGTCCCACTAGCGTCAGCTAGCAGGAGGTTTTGAATCCCTACTGGAGGGATCTCAATACGGTGAAAAGCTTCTGTGCTACCGGCACCAATCTTTGCTAAGTAATCAACACATGCATTCCCCTCTCTCAACGTGTGAATAACTTGGACTTGCCAATCCCTTGATAAGAGCTCCTGGATGTTGTGAATAATTGCTGCATAGTAATGTTAGTCATTCACATGTTCATTGATCCATTTAATAGCAGACTGAGAATCAGAATAACACAATAACTCCCTCTCTGTAACCAAAGATCCACGCCGTCTTCACCCCATGATATAAAGCCAACAACTCAGCATGCATGATATTTGGGTAGCCTATATTACCTGCAAAACCAATGATCCAACCGCCGTCGGAGTTTCTAAGAAGGCCACCAAAACCAGAGACACCCCGGGTTGCCAATACTGCTACCACCGACATTCAAAATAATGTCACTCCTCTTTGCTGCATTCCAAGTAGTCTGTCGTGTGGAGGAAGAAATAATAAGGTGCGAAAAACAAATACACAACAAATTAGCATAATTAACTGTCAAAAGCTTTAACGTGTATGATGGCACCATCTCATTCGCAAGACAAAGCTTATTACGAGCACGCCACAACCACCAGCAAGCCGCCAGGAAAAGAAAGCTATGGTCTCCATCTAGGCTGGAACGCAACCAGATATAGAGATTAGCCTCCTAGAAGAACTGACTATCAGAAAAACCGATGGACCGCCAAAAGGCTTGAACTAATGTTTTCCTTTTAAAATTATTTCAAATCAATAGCATATTCATTTAACAATTTTAATTATTTTGAACCACAAGGTATAAAGTGGACCACTTAAAAAATGGTCCACTAATGCACCACTTAAAAATATTTGCACCCAAAACCCTCTTTGGGTGGTGGCGGAGCAACTAAAAAAAGAGTTAGAGGGAGTCTCTCGAAGCTTCGATTGAAGTAGAATTTGAAGCCATTTGATCTCATGGTGCCAACGCTCATATGGTTCCTGATCATTGTGGTGATGCTTTTCCTGATTACGAAACCCTAATTTATTTGGGACTTAAACTCTGGTTATCTGTCAGGACTTGAGGTATATGGGGAACAAGAGATTTGGAGAAGCGCGTTAAGGTCACTGTCGTGAAAGCACACGAGGTTGAGGGAGTGAGGTTTGGGAACATGTAAAAGAAGCAAGGGAGGAAATGGAAGTTGGATCACACACTATCTTTTGATAAATAGTAGACTTATAAATTGGTGTCTATCGTAAAACGTAACCTTGTTTTGTTAAATAGAGACGATGTTGTAAACATAACATTCAGTGTAGTTGAGAATTATGGCCATGAAAACAAATACCACCGACTATATCAGCGGTGAATATAAACTTTTCATTCACAAATACGAATTAACTGTCACTACAATTAATTCGTTTACAATTTTTTTTAAAACAGTCAGTTTAGTCACTAAACTTTTTGGTTTTACCGGGGTATCTACCGCCGACCGCAGCGACTAATCCCCTCGCTGGATTATAGGCACCTTGATGGGTGGGACAGCTGGTTCGAGGTATTTAACGCTGCTCCATATCCATGGCGGAGATCGAACTCCCGACCATTAATTAAAGGAGGATGAGCCCCGACCGCTCAACCTCACTAAACTATATCACACTTTCTCAAATTTAGTTTATAAACTATAAAAACCTATTAAATAGTAGTTCAATTGATGAAAATTTATAGACTAAATTGATGGATGAAGATAAATTTTAAATACTATTTTAATATATTTTTATAGTTTAAGTAATAAATTGGAGAGTGCAAGATAGTTTAGAGACTTTTTGATTTCGTTGAATTGTAAGTGCCTCGAGGGGCAGGACAACTGGCCCAGAGTTTTAACGTTGCTCCGTACTCAAAGTGGAGATCGAACCCCCGACCCTTGGTTAAAGGAGGATCAGCCCAAACCGCTGAACTCAAAGTCTCATTATATTAGAGACTAATATAAAGTTTATTTTTTTTTATTTTACATTTTACATAATTTCTTTAAAATTAAAATACTCGTAACAGAAAAAGGAAAGGAGTCCTCTGTTGTTCCAGAAAACCCAAAACAAATAAAATTTTGACAGTCGGACGGAAATTACACGAAGCTACCCTTCCACCGTACCTCCGCCGTCGTCACCGCCGCTGTACTCAGATCCACTCATCAATCAGAGGACCAGAATTTCAAAAATCTCCTTTTAATTCCTAAATAAAAAAAATGTTGTCTCTGAATTCCGAATCGGATTGATCGCG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00637.23	Clathrin	414	536	1.70E-22
PF12451.11	VPS11_C	906	948	3.90E-15
PF17122.8	zf-C3H2C3	866	901	2.30E-06

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0006886	intracellular protein transport	Biological Process
GO:0007033	vacuole organization	Biological Process
GO:0004672	protein kinase activity	Molecular Function
GO:0048284	organelle fusion	Biological Process
GO:0005524	ATP binding	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR036322	WD40-repeat-containing domain superfamily
IPR016528	Vacuolar protein sorting-associated protein 11
IPR024763	Vacuolar protein sorting protein 11, C-terminal
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat

trEMBL

trEMBL term	Description
A0A1S2Z8A4	_

SwissProt

SwissProt term	Description
VPS11_ARATH	Vacuolar protein-sorting-associated protein 11 homolog

KEGG

KO	Description	Enzyme
K20179	vacuolar protein sorting-associated protein 11

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G05170	vacuolar protein sorting 11
Medicago sativa L.	MsG0080048790.01.T01	_
Oryza sativa L.	LOC_Os04g31390.1	vacuolar protein sorting-associated protein 11, putative, expressed
Cucumis sativus L.	Csa007778	_
Glycyrrhiza uralensis Fisch.	Glyur000319s00018964.1	_
Codonopsis lanceolata	Cl_chr04_18810T	_
Arachis hypogaea L.	AH02G20620.2	Vacuolar protein-sorting-associated protein 11 homolog like

Expression pattern