Gene detail

Detail information of Am01G002940.1 Annotation

Gene ID	Annotation
Am01G002940.1	Vacuolar sorting protein 39

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am01G002940.1	mRNA	Chr01	10699080	10710259	-

Sequences

CDS:

>Am01G002940.1
ATGGCGAAATCCGAACCCAGCACGAGTCGAATCGTGATGGAGCCACTATCACAGTTCGACATCTCCACACACTCTCGCACCACCACCGTCCGATCACTTGCCATCTCAACGTTTTCCAATTCACAACACCACAGCGGAACAATTCTCTACGTTGGCACTCACTCCGGAACCCTATTTTCCCTCTCCGCCGATGTAAACGACATTAACGGCGCCACGGTTGCGGATTCCGGTCCCTTTCTTCGGAAACTATCGTTTCTGCGAAGTGTTTCCGTGAGCGACTCCCCCGTGGATGTCGTTTTGGTACTCGCAGATTTGGGGAAGGTATTGTTGCTCTCCGACGGGTCGTTGTTCTTGGTGGATTCTGAACTCTCCAATCGTGCCGTGAGGTTAGGGTTTTCGAAGGGCGTTGCTGTTGTAACTAGAAGGAGGATGAGAAACAATGAGTCTGAAGGATTGGGTTTGGATACTAATAATCAACGGTTTCTGCATAAATTGGGAGGGTTGATAGTGAAGGATAGTGAGGCACAGAGTGAGGGTGGTGGTAGTGGTGGTTGTGTTTTGGCACTTGCTATTGGGAAAAGATTGGTGATTGTAGAGCTTGTTTTGGGGAATAGAGGTGGGAAGAGTGATAAAGATGTTAATAATGCGTCTCTTGTTGTTTTGAAAGAGATTCAGTGTGTTGATGGAGTTGTTAGTACTATGGTGTGGCTTGATGATTCCATTGTTGTTGGAACTGCCAATGGATATAGCTTGATTTCGTGTATTAGTGGACAGAGCAGTGTTATATTCTCATTACCGGATGTGTCTCGGCCGCCACGGTTGAAGTTGCTCTACAGAGAGTGGAGGGTGTTGTTGTTGGTGGACAATGTGGGGATTATTGTTGATGCACATGGGCAGCCGGTTGGGGGTAGTCTTGTTTTCCGGCATGGCTTGGATTCTGTGGGAGAGTTGTCTTTCTATGTGGTTGTTGTGAGTGATGGAAAGATTGAGCTGTATCATAAGAAAAATGGGAGTTGTGTTCAGGTGTTGCCGTTTGGCGGGGAAGGGATTGGGCCTTGTGTTGTTGCAAGTGAGGAAGATAAGGGTGGGAAGCTTGTTACTGTTGCAACTGCTACCAAGGTAGTGTGCTATCAGAAATTACCATCTGTAGAACAAATAAAAGACCTTTTGAGGAAGAAGAACTATAAGGGAGCCATATCCTTGGTAGAGGAACTTGAGTCTGAAGGTGAAATGTCAAAAGATTTGCTCTCATTTGTTCATGCTCAGGTCGGGTTCCTTTTGCTTTTTGACTTGCATTTTGAAGAAGCAGTGGACCACTTTCTGCTCTCTGAGACAATGCAACCGTCTGAAATATTCCCATTTATAATGCGAGATCCAAATCGCTGGTCCTTACTGGTTCCTAGGAATCGGTATTGGGGTTTGCATCCTCCCCCAGCCCCTCTTGAAGATGTAGTAGATGATGGCTTGATGACAATCCAAAGAGCATCTTTCCTAAGGAAAGCAGGTGTAGAAACAATAGTAGATAATGAACTTTTTCTGAATCCACCGAATAGAGCTGATTTGTTGGAGTCAGCGATCAAAAACATTAGCAGGTATTTGGAAGCTTGTAGAGAGAAGGAATTAACGCAGTCAGTCAGTGAGGGGGTTGACACTCTATTAATGTATCTCTTTAGAGCCCTAAATCGTATTGAGGACATGGAAAGGTTGGCATCTTCTACAAATTGGTGTGTTGTGGATGAGTTGGAACACATGTTGGAAGAGTCGGGGCACCTACGGACCCTTGCCTTCCTATATGCAAGTAAAGGAATGAGCTCAAAAGCTGTGTCTATTTGGCGCATCCTGGCAAGAAATTATTCATCTAGCCTATGGAAAGACCTCGTTTTGGAGACTAGTATACAGGATAGCGGGGAAAACCTTATTTCTAGCAAGGCAGTTGCTGCAGCTGAAGCTTCAAAGATTCTTGAGGAGTCATCTGACCAAAATCTGATTCTCCAACATCTAGGATGGATCACAGATATCAGCCAGGTTCTTGCAGTCAAAATTCTAACTTCAGACAAACGAGAGATCCAGCTTTCTCCTGATGAAGTCATTACATCAATTGATCCGCAGAAAGTAGAAATTTTACAGAGGTATCTCCAATGGTTGATTGAAGACCAAGACTGTGTTGATACTCAGTTCCATACATTGTATGCCCTCTCACTTGCCAAATCAACAATTGAAGCCTTTGAGCCTGAAAGCATATCTGAAAATCTAGCTACTGGAACAGAAACAAAAAGTTTGACTATTTTGAGGAACTCAATATTTCAGACTCCTGTCAGGGAAAGATTACAGATATTTTTACAATCCTCAGACTTGTATGATCCAGAAGAAGTTCTTGATTTGATTGAAGGATCAGAATTATGGTTAGAAAAGGCTATTCTGTATAGAAGACTCGGGCAAGAGACTTTGGTCCTCCAAATTTTGGCTTTGAAATTAGAAGACAGTGAAGCTGCTGAGCAGTATTGTGCTGAGATTGGTAGAGCTGATGCCTACATGCAATTGCTAGAAATGTATTTGGATCCACAGGATGGTAAGGATCCCATGTTTACTGCTGCGGTTCGCCTTCTCCACAATCATGGAGAATCATTAGATCCATTGCAAGTTTTAGAGAAACTATCACCAGATATGCCGCTTCAACTTGCTTCTGAGACTTTACTAAGAATGTTCAGGGCCCGAGTTCATCATCATCGTCAAGGACAGATTGTGCATAACCTATCTCGTGCCGTAGACATTGATGCAAGATTGTCAAGATTAGATGAAAGATCAAGGCATGTGCAGATTAATGATGAGAGTCTATGTGATTCTTGTAATGCACGCCTCGGTACCAAGCTATTTGCAATGTACCCTGATGACACTGTTGTATGTTACAAGTGTTACCGGCGTCAAGGTGAGTCATTGTCTGTCTCAGGCCGCAATTTTAAGGAAGACATCCTAGTTAAACCAGGTTGGCTTGTGAGTCGTTGA

Protein:

>Am01G002940.1
MAKSEPSTSRIVMEPLSQFDISTHSRTTTVRSLAISTFSNSQHHSGTILYVGTHSGTLFSLSADVNDINGATVADSGPFLRKLSFLRSVSVSDSPVDVVLVLADLGKVLLLSDGSLFLVDSELSNRAVRLGFSKGVAVVTRRRMRNNESEGLGLDTNNQRFLHKLGGLIVKDSEAQSEGGGSGGCVLALAIGKRLVIVELVLGNRGGKSDKDVNNASLVVLKEIQCVDGVVSTMVWLDDSIVVGTANGYSLISCISGQSSVIFSLPDVSRPPRLKLLYREWRVLLLVDNVGIIVDAHGQPVGGSLVFRHGLDSVGELSFYVVVVSDGKIELYHKKNGSCVQVLPFGGEGIGPCVVASEEDKGGKLVTVATATKVVCYQKLPSVEQIKDLLRKKNYKGAISLVEELESEGEMSKDLLSFVHAQVGFLLLFDLHFEEAVDHFLLSETMQPSEIFPFIMRDPNRWSLLVPRNRYWGLHPPPAPLEDVVDDGLMTIQRASFLRKAGVETIVDNELFLNPPNRADLLESAIKNISRYLEACREKELTQSVSEGVDTLLMYLFRALNRIEDMERLASSTNWCVVDELEHMLEESGHLRTLAFLYASKGMSSKAVSIWRILARNYSSSLWKDLVLETSIQDSGENLISSKAVAAAEASKILEESSDQNLILQHLGWITDISQVLAVKILTSDKREIQLSPDEVITSIDPQKVEILQRYLQWLIEDQDCVDTQFHTLYALSLAKSTIEAFEPESISENLATGTETKSLTILRNSIFQTPVRERLQIFLQSSDLYDPEEVLDLIEGSELWLEKAILYRRLGQETLVLQILALKLEDSEAAEQYCAEIGRADAYMQLLEMYLDPQDGKDPMFTAAVRLLHNHGESLDPLQVLEKLSPDMPLQLASETLLRMFRARVHHHRQGQIVHNLSRAVDIDARLSRLDERSRHVQINDESLCDSCNARLGTKLFAMYPDDTVVCYKCYRRQGESLSVSGRNFKEDILVKPGWLVSR*

Promoter(3k):

>AM01G002940.1
GATTAAAAGAATTAATTGGGATTTAACGACGGACATAGCGAGGGATGCGTCGGTCGCTAATCCTTCACGCTTCCCAAGTACCTACAACGGTCAGAAGTTTGCGAGGGACCACTGAATCTGTCGCTAACTTTTCTTAGTTTTCGTGCTGCGCAGTTTCAAATTGGCGCCCAGGATTTAGCGACGGAAATTCTGTTGTTATTGCTCAAAAATCCGTCGCAAATTCTCAACATAGACGAGGGCCCTTATTCCCTCACAAAATCCGTCGCTAATTCCATTTTTTGCGAGGGACCATCATTCCGTCGCTAATGTCCGTCGCTAATGAGCAATTTTTTTGTAGTGATTGGCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATATTCTAGGTGTGTATGAGTTTATTTACATATTCATCCTTTCGATTTTTGGGTTGTTAAATTTGTGTCGTTTTCAACATATTTTGCCAATTTCAATTGCATAGTTTTTTTAGTTTAATTTATATACACAATATGTGTATACATGTTTTACACTATCTACCAATTATAGGGTGACACATCATTAAAAAGAAGTTACTCAATTAGTAACCACATGATGTGTCATCGCTATCTTGTATTGTGATTGGTTGATAGTGTAATAAGTTTTACTAAACATGTGTATACCGATTAAACTCTAATTTTTTTGTCAAAAAATAAAATAAAATTGCATAAATAGAACAAAACAAACTAGGGTTAATAGCCAATTTGGTCCCTGAAAGTGTAGCTCGCTGTCAATTTGGTCCCTCGTTCGAGCAAAAATGCAAAAAGGTCCCTCAATGCGTATTCCGTCCATCACGTTCGTCCTTCACGTTAGTGGACATCCTTAACTCCGTCAATTAATTGGCTGATTTGGCACGTTTTATGCCACATGGATCTGCTGATTTGGCATTTTAATCTTACATATATCTTCTTCTTCTTCTTCTTCCCCAAACCCAGTCCAAAAATTAAACCCAAAAACTTCCAGTTAAACCCGGATCCTTCTCACCTTCCCGTTTCTCTCTCTCCCTACAGATCTCACCTTCACGAATCACGCAGAAATTTCAAGCTATAGACATGACGCATTCCCAGCCAGCCATGACGACGATTCACAGAACAACTACCACCGTCAGAAACGCTCTCTCACTACAGACATTGATGTAGGAATATAAATTGGGTCTAATGATGTGATTTGAGTCTTAGTATGTTCATTTGTTGTTGATGTAATGTTCTATGGAATCTGCACCATTTGGGTAATATTCACAAAACTGCTGCATAATTGGAATCTGCATAATACTGCATAATATTCCAATACTGCATACTCATGTAATGTTGTTAATTTTCAATAGCATTATCTGTCAAACAAAAACGGATGCATAACTGCATAATTCGTCCCTGTAATAACTGCATAATATTCAAGTTAAATTATATTTCTACATAAAAACTGTCAAATTAGTCCCTGAAACATATACATTTTATCTCATTTTAGTCCCTGAAAGATGTCACTTACTGTCATTTTAGTCCCTGAAACATATATGTGAGTTCATTTTAGTCCCTCGAATCTTAAATTACTTCTGCAGTGCAATCAGTTCATCTCACACTTCACAAAACCCAGAATTTTAAACTAGAAACTTTAAGTGCAAAACCAGAATATTTCAATAACATTTTCTAATACATATGCATAATTGCAACTTCATAATTTGTCCAAAACATATGCATAATTGCATAGTTGCATAACTGGTTCAAAAGATTAACTACATATTCTATTACAACTCATAATTTGTCTAAAACATATGCATAATTGCATAGTTGCATAACTAGTTCAAAAAATATCCTACATATTCTATTACAACTCTTCAAATAATTGCATAATTGCATATGCTAAAATAGTCATACAGCAAGACTATTATTTATTTGAATTACAATAGGAAGACTATTTGAAGACTATGAACTAGTTGTAATATGTATTAGTAGGATATCTTTTGAACAAATTATGAAGTTGTAATAGAATATGTAGGATATCTTTTGTTATATATGTTTATGCATTATGTAATACAATTATGTTTGAGATGAACTGGTTTGCAATATGAATTAACGCAGATGTTTCAGGGACTAAAATGATAGTGGATTCAGGGACTAAAATGAATTAACGCAGATGTTTCAGGGACTAAAATGACAGTGAGTGATATCTTTTAGGGACTAAAATGAGATAAGTGTATCTGTTTCAGGGACTATTTTGTACGACATTATGAATTGGTAGTGGATTCAGGGACTAATGATGCATTGCTCCTCTATGACGACATTGAGCGATGATGGAGGACGAGTGAGCTGATTAGAGGTGCGATAATGGAGGAGCAAAAGAGGGGGGAGAAGAGGGGATTCTGAATCTGTGGAAGAAGAAGGGGATACGGTTTCTTGTTTTACTTTCATTTTACTCCCCAAAAGTTTTTATCAAACAAAGCCACGTAAGCATTGAAATGTGGCACTTAACGTGTTAAGTGCCACATCAGCGTAATTAACAAAGTTAATAACTTCTGCTAACGTGAGGGATGAACATGATGGACGGAATACACATTGAGGGACTGTTTTGTATTTTGGGTCGAATGATGAACTAAATTGACAGCTAGCTGCACTTCCAGACCAATTTAGCTATTTACCCAACAAACTATGGTGGAACGAATCGTACTATAGTATTCTTTGTCCACCTGGAGCCGCGATCTCTGCGAAGATCCCGAAACAGCATCACTGAAATCGAACTCAATCGAAAAAAAAAGACGGACACTACAGTTCACTGTTTCTGGTTCCCCATTTGAGTCGAATCACTGCACTGTTCTCCTTTCTCTCCCAAAGGCACTGTGGAGCAGAGTGCAACTGCAGAGAGGCTCGCGGAAGCTTCAACAACCTCACACGAATTTTGCATGCATTTCATAGAGAAAGAGGTTTAGGTATCGTTGCTTAGATTAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF10367.12	Vps39_2	866	973	3.90E-29
PF00637.23	Clathrin	708	853	1.70E-11
PF00780.25	CNH	46	344	8.90E-09

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0031977	thylakoid lumen	Cellular Component
GO:0016050	vesicle organization	Biological Process
GO:0006914	autophagy	Biological Process
GO:0010015	root morphogenesis	Biological Process
GO:0015979	photosynthesis	Biological Process

InterPro

InterPro term	Description
IPR032914	Vam6/VPS39/TRAP1 family
IPR019453	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2
IPR019452	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat
IPR001180	Citron homology (CNH) domain

trEMBL

trEMBL term	Description
A0A9D4XMW0	_

SwissProt

SwissProt term	Description
VPS3_ARATH	Vacuolar sorting protein 3

KEGG

KO	Description	Enzyme
K20177	vacuolar protein sorting-associated protein 3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G22860	Vacuolar sorting protein 39
Medicago sativa L.	MsG0880042292.01.T01	_
Oryza sativa L.	LOC_Os05g01360.1	expressed protein
Cucumis sativus L.	Csa021669	_
Glycyrrhiza uralensis Fisch.	Glyur000841s00026263.2	_
Codonopsis lanceolata	Cl_chr07_00880T	_
Arachis hypogaea L.	AH19G10950.1	Transforming growth factor-beta receptor-associated protein 1 homolog like

Expression pattern